• using R version 2.15.0 Patched (2012-03-31 r58888)
• using platform: sparc-sun-solaris2.10 (32-bit)
• using session charset: UTF-8
• using option ‘--no-vignettes’
• checking for file ‘mcmc/DESCRIPTION’ ... OK
• this is package ‘mcmc’ version ‘0.8’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for .dll and .exe files ... OK
• checking whether package ‘mcmc’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... NOTE
  The following files should probably not be installed:
  ‘Makefile’, ‘bfst.tex’, ‘debug.tex’, ‘demo.tex’, ‘metrop.tex’,
  ‘temper.tex’
  
  Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
  or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
• checking examples ... [21s/21s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [301s/301s] OK
  Running ‘circle.R’
  Comparing ‘circle.Rout’ to ‘circle.Rout.save’ ... OK
  Running ‘initseq.R’ [30s/30s]
  Comparing ‘initseq.Rout’ to ‘initseq.Rout.save’ ...40c40,41
  < Iso 0.0-10
  ---
  > Iso 0.0-8
  > Note: This package now has a NAMESPACE.
  Running ‘logit.R’
  Comparing ‘logit.Rout’ to ‘logit.Rout.save’ ...67c67
  < [1] 8.228085e-06 5.494314e-06 6.075140e-06
  ---
  > [1] 8.242296e-06 5.499507e-06 6.082246e-06
  Running ‘logitbat.R’
  Comparing ‘logitbat.Rout’ to ‘logitbat.Rout.save’ ... OK
  Running ‘logitfun.R’
  Comparing ‘logitfun.Rout’ to ‘logitfun.Rout.save’ ... OK
  Running ‘logitfunarg.R’
  Comparing ‘logitfunarg.Rout’ to ‘logitfunarg.Rout.save’ ... OK
  Running ‘logitidx.R’
  Comparing ‘logitidx.Rout’ to ‘logitidx.Rout.save’ ... OK
  Running ‘logitlogidx.R’
  Comparing ‘logitlogidx.Rout’ to ‘logitlogidx.Rout.save’ ... OK
  Running ‘logitmat.R’
  Comparing ‘logitmat.Rout’ to ‘logitmat.Rout.save’ ... OK
  Running ‘logitnegidx.R’
  Comparing ‘logitnegidx.Rout’ to ‘logitnegidx.Rout.save’ ... OK
  Running ‘logitsub.R’
  Comparing ‘logitsub.Rout’ to ‘logitsub.Rout.save’ ... OK
  Running ‘logitsubbat.R’
  Comparing ‘logitsubbat.Rout’ to ‘logitsubbat.Rout.save’ ... OK
  Running ‘logitvec.R’
  Comparing ‘logitvec.Rout’ to ‘logitvec.Rout.save’ ... OK
  Running ‘saveseed.R’
  Comparing ‘saveseed.Rout’ to ‘saveseed.Rout.save’ ... OK
  Running ‘temp-par-witch.R’ [49s/49s]
  Comparing ‘temp-par-witch.Rout’ to ‘temp-par-witch.Rout.save’ ... OK
  Running ‘temp-par.R’ [33s/33s]
  Comparing ‘temp-par.Rout’ to ‘temp-par.Rout.save’ ...19c19
  < -2.0371 -0.6337 0.2394 0.6685 1.9599
  ---
  > -2.0371 -0.6337 0.2394 0.6686 1.9599
  32,34c32,34
  < Null deviance: 134.602 on 99 degrees of freedom
  < Residual deviance: 86.439 on 96 degrees of freedom
  < AIC: 94.439
  ---
  > Null deviance: 134.60 on 99 degrees of freedom
  > Residual deviance: 86.44 on 96 degrees of freedom
  > AIC: 94.44
  Running ‘temp-ser-witch.R’ [73s/73s]
  Comparing ‘temp-ser-witch.Rout’ to ‘temp-ser-witch.Rout.save’ ... OK
  Running ‘temp-ser.R’ [50s/50s]
  Comparing ‘temp-ser.Rout’ to ‘temp-ser.Rout.save’ ...19c19
  < -2.0371 -0.6337 0.2394 0.6685 1.9599
  ---
  > -2.0371 -0.6337 0.2394 0.6686 1.9599
  32,34c32,34
  < Null deviance: 134.602 on 99 degrees of freedom
  < Residual deviance: 86.439 on 96 degrees of freedom
  < AIC: 94.439
  ---
  > Null deviance: 134.60 on 99 degrees of freedom
  > Residual deviance: 86.44 on 96 degrees of freedom
  > AIC: 94.44
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... SKIPPED
• checking re-building of vignettes ... SKIPPED
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/ripley/R/packages/tests32/mcmc.Rcheck/00check.log’
  for details.