• using R version 2.15.0 Patched (2012-03-31 r58888)
• using platform: sparc-sun-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘maxLik/DESCRIPTION’ ... OK
• this is package ‘maxLik’ version ‘1.1-2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for .dll and .exe files ... OK
• checking whether package ‘maxLik’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  logLikGrad: no visible binding for global variable ‘lastFuncParam’
  logLikGrad: no visible binding for global variable ‘lastFuncGrad’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [12s/12s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [22m/22m] OK
  Running ‘BFGSR.R’
  Comparing ‘BFGSR.Rout’ to ‘BFGSR.Rout.save’ ...72,73c72,73
  < [1,] 1.8445e-07 -3.6893e-07
  < [2,] 1.8445e-07 -3.6893e-07
  ---
  > [1,] 1.8402e-07 -3.6804e-07
  > [2,] 1.8402e-07 -3.6804e-07
  Running ‘constraints.R’ [13m/13m]
  Comparing ‘constraints.Rout’ to ‘constraints.Rout.save’ ...378,389c378,389
  < iter 10 value 3674.195949
  < iter 11 value 3671.068778
  < iter 12 value 3626.176289
  < iter 13 value 3589.956128
  < iter 14 value 3552.974553
  < iter 15 value 3551.811761
  < iter 16 value 3551.806182
  < iter 17 value 3551.796650
  < iter 18 value 3551.796402
  < iter 19 value 3551.782457
  < iter 20 value 3551.776239
  < iter 21 value 3551.776083
  ---
  > iter 10 value 3674.195892
  > iter 11 value 3671.068754
  > iter 12 value 3626.179862
  > iter 13 value 3589.958026
  > iter 14 value 3552.974654
  > iter 15 value 3551.811769
  > iter 16 value 3551.806189
  > iter 17 value 3551.796655
  > iter 18 value 3551.796407
  > iter 19 value 3551.782460
  > iter 20 value 3551.776241
  > iter 21 value 3551.776085
  391,398c391,398
  < iter 23 value 3551.774916
  < iter 24 value 3551.774039
  < iter 25 value 3551.773851
  < iter 26 value 3551.773749
  < iter 27 value 3551.773476
  < iter 27 value 3551.773465
  < iter 27 value 3551.773465
  < final value 3551.773465
  ---
  > iter 23 value 3551.775004
  > iter 24 value 3551.774150
  > iter 25 value 3551.773955
  > iter 26 value 3551.773847
  > iter 27 value 3551.773493
  > iter 27 value 3551.773487
  > iter 27 value 3551.773479
  > final value 3551.773479
  403c403
  < BFGS maximisation, 145 iterations
  ---
  > BFGS maximisation, 136 iterations
  409,411c409,411
  < [1,] 0.5000 0.0257 19.5 <2e-16 ***
  < [2,] -1.0358 0.0582 -17.8 <2e-16 ***
  < [3,] 1.0112 0.0585 17.3 <2e-16 ***
  ---
  > [1,] 0.5000 0.0256 19.5 <2e-16 ***
  > [2,] -1.0357 0.0581 -17.8 <2e-16 ***
  > [3,] 1.0112 0.0584 17.3 <2e-16 ***
  417c417
  < 1 outer iterations, barrier value -8.6007e-05
  ---
  > 1 outer iterations, barrier value -7.6798e-05
  567,568c567,568
  < [2,] -1.3677 0.0698 -19.6 <2e-16 ***
  < [3,] 0.6839 0.0515 13.3 <2e-16 ***
  ---
  > [2,] -1.3677 0.0697 -19.6 <2e-16 ***
  > [3,] 0.6839 0.0514 13.3 <2e-16 ***
  710c710
  < [1,] -1.3034 0.0458 -28.5 <2e-16 ***
  ---
  > [1,] -1.3034 0.0458 -28.4 <2e-16 ***
  Running ‘examples.R’
  Comparing ‘examples.Rout’ to ‘examples.Rout.save’ ...17c17
  < [1] 1.9127e-10 1.6867e-10
  ---
  > [1] -3.3317e-11 -5.6433e-11
  20c20
  < [1] -4.4409e-10 -3.3307e-10
  ---
  > [1] 1.1102e-10 1.1102e-10
  56,57c56,57
  < [1,] 1.9127e-10 -4.4409e-10
  < [2,] 1.6867e-10 -3.3307e-10
  ---
  > [1,] -3.3317e-11 1.1102e-10
  > [2,] -5.6433e-11 1.1102e-10
  71c71
  < [1] NA -2.5857e-07
  ---
  > [1] NA -2.5863e-07
  76c76
  < [2,] NA -0.73574
  ---
  > [2,] NA -0.73569
  108c108
  < [2,] 3.5151e-07 -2.5857e-07
  ---
  > [2,] 3.5151e-07 -2.5863e-07
  130c130
  < b 3.5151e-07 -2.5857e-07
  ---
  > b 3.5151e-07 -2.5863e-07
  203c203
  < [1] 5.6843e-08 5.6843e-08
  ---
  > [1] 0.0000e+00 5.6843e-08
  207,208c207,208
  < [1,] -1004.9 0.0
  < [2,] 0.0 -2009.7
  ---
  > [1,] -1004.8 0.0
  > [2,] 0.0 -2009.8
  252,253c252,253
  < [1,] -1004.9 0.0
  < [2,] 0.0 -2009.7
  ---
  > [1,] -1004.8 0.0
  > [2,] 0.0 -2009.8
  256,257c256,257
  < [1,] 0.031546 0.000000
  < [2,] 0.000000 0.022307
  ---
  > [1,] 0.031547 0.000000
  > [2,] 0.000000 0.022306
  259c259
  < [1] 0.031546 0.022307
  ---
  > [1] 0.031547 0.022306
  1009c1009
  < [1] -4.9055e-07
  ---
  > [1] -5.4529e-07
  1013c1013
  < [1,] -22.784
  ---
  > [1,] -22.759
  1043c1043
  < [9,] 0.3749330
  ---
  > [9,] 0.3749329
  1349c1349
  < [1] -2.5224e-07
  ---
  > [1] -2.4158e-07
  1353c1353
  < [1,] -21.615
  ---
  > [1,] -21.618
  1384c1384
  < [1,] 2.151 -2.5224e-07
  ---
  > [1,] 2.151 -2.4158e-07
  1448c1448
  < [1] -1.1102e-10 -1.1102e-10
  ---
  > [1] 1.1102e-10 0.0000e+00
  1452,1453c1452,1453
  < [1,] -2 0
  < [2,] 0 -2
  ---
  > [1,] -2.0002 0.0000
  > [2,] 0.0000 -2.0002
  1484,1485c1484,1485
  < [1,] 2 -1.1102e-10
  < [2,] 1 -1.1102e-10
  ---
  > [1,] 2 1.1102e-10
  > [2,] 1 0.0000e+00
  1691c1691
  < [1] 9.3119
  ---
  > [1] 9.2766
  1694c1694
  < [1] 11069
  ---
  > [1] 10685
  1697c1697
  < [1] 9.0347e-05
  ---
  > [1] 9.3591e-05
  1772c1772
  < [1] 9.3119
  ---
  > [1] 9.2766
  1775c1775
  < [1] 11069
  ---
  > [1] 10685
  1778c1778
  < [1] 9.0347e-05
  ---
  > [1] 9.3591e-05
  Running ‘finalHessian.R’
  Comparing ‘finalHessian.Rout’ to ‘finalHessian.Rout.save’ ... OK
  Running ‘fitExpDist.R’ [19s/19s]
  Comparing ‘fitExpDist.Rout’ to ‘fitExpDist.Rout.save’ ...187,189c187,188
  < [1] "Component 3: Mean absolute difference: 3.9108e-07"
  < [2] "Component 4: Mean relative difference: 0.00063674"
  < [3] "Component 9: Mean relative difference: 0.16667"
  ---
  > [1] "Component 3: Mean relative difference: 0.48766"
  > [2] "Component 4: Mean relative difference: 0.00047702"
  386,387c385
  < [3] "Component 4: Mean relative difference: 0.00015906"
  < [4] "Component 7: Mean relative difference: 1.409e-05"
  ---
  > [3] "Component 7: Mean relative difference: 1.409e-05"
  394,395c392,393
  < [1] "Component 3: Mean relative difference: 6.2415e-06"
  < [2] "Component 4: Mean relative difference: 3.1402e-05"
  ---
  > [1] "Component 3: Mean relative difference: 6.7051e-06"
  > [2] "Component 4: Mean relative difference: 0.00019046"
  460c458
  < as.Date, as.Date.numeric
  ---
  > as.Date
  567c565
  < [1,] 4.4771
  ---
  > [1,] 4.4778
  615,616c613,614
  < [1,] 0.043554
  < [1] "Mean relative difference: 0.02794"
  ---
  > [1,] 0.043568
  > [1] "Mean relative difference: 0.027776"
  Running ‘fitNormalDist.R’ [526s/526s]
  Comparing ‘fitNormalDist.Rout’ to ‘fitNormalDist.Rout.save’ ...152c152
  < Return code 2: successive function values within tolerance limit
  ---
  > Return code 1: gradient close to zero
  159c159
  < Return code 2: successive function values within tolerance limit
  ---
  > Return code 1: gradient close to zero
  165c165
  < sigma 1.816 0.128 14.1 < 2e-16 ***
  ---
  > sigma 1.816 0.128 14.2 < 2e-16 ***
  179c179
  < sigma 1.6686
  ---
  > sigma 1.6667
  182,183c182,183
  < mu -30.325964 -0.028422
  < sigma -0.028422 -60.623506
  ---
  > mu -30.326 0.000
  > sigma 0.000 -60.652
  196c196
  < [1] 2
  ---
  > [1] 1
  198c198
  < [1] "successive function values within tolerance limit"
  ---
  > [1] "gradient close to zero"
  201,202c201,202
  < mu 3.2975e-02 -1.5459e-05
  < sigma -1.5459e-05 1.6495e-02
  ---
  > mu 0.032975 0.000000
  > sigma 0.000000 0.016488
  216c216
  < sigma 1.816 0.128 14.2 < 2e-16 ***
  ---
  > sigma 1.816 0.128 14.1 < 2e-16 ***
  221,223c221
  < [1] "Component 3: Mean relative difference: 0.0012492"
  < [2] "Component 4: Mean relative difference: 0.5"
  < [3] "Component 5: 1 string mismatch"
  ---
  > [1] "Component 3: Mean relative difference: 0.00093721"
  258,262c256,257
  < [1] "Component 2: Mean relative difference: 1.6411e-08"
  < [2] "Component 3: Mean relative difference: 1.0078"
  < [3] "Component 4: Mean relative difference: 0.00094782"
  < [4] "Component 5: Mean relative difference: 0.5"
  < [5] "Component 6: 1 string mismatch"
  ---
  > [1] "Component 3: Mean relative difference: 1.0121"
  > [2] "Component 4: Mean relative difference: 0.00063571"
  265,266c260,262
  < [1] "Component 3: Mean relative difference: 1.0502"
  < [2] "Component 4: Mean relative difference: 0.00052447"
  ---
  > [1] "Component 3: Mean relative difference: 0.98526"
  > [2] "Component 4: Mean relative difference: 0.00030178"
  > [3] "Component 11: Mean relative difference: 1.5624e-08"
  496,497c492,493
  < [1] "Component 2: Mean relative difference: 2.472e-07"
  < [2] "Component 3: Mean relative difference: 19.413"
  ---
  > [1] "Component 2: Mean relative difference: 2.6258e-07"
  > [2] "Component 3: Mean relative difference: 34.092"
  499,501c495,499
  < [4] "Component 4: Mean relative difference: 0.093625"
  < [5] "Component 9: Mean relative difference: 0.85714"
  < [6] "Component 10: 1 string mismatch"
  ---
  > [4] "Component 4: Mean relative difference: 0.094592"
  > [5] "Component 5: Mean relative difference: 1"
  > [6] "Component 6: 1 string mismatch"
  > [7] "Component 9: Mean relative difference: 0.85714"
  > [8] "Component 10: 1 string mismatch"
  613c611
  < [2] "Component 4: Mean relative difference: 0.094511"
  ---
  > [2] "Component 4: Mean relative difference: 0.093944"
  616,617c614,615
  < mu -30.297542 0.028422
  < sigma 0.028422 -60.595085
  ---
  > mu -30.298 0.000
  > sigma 0.000 -60.595
  691c689
  < [1] "Component 3: Mean relative difference: 0.00013262"
  ---
  > [1] "Component 3: Mean relative difference: 0.00015243"
  812,813c810,811
  < [1] "Component 3: Mean relative difference: 0.00013263"
  < [2] "Component 4: Mean relative difference: 0.00092775"
  ---
  > [1] "Component 3: Mean relative difference: 0.00015241"
  > [2] "Component 4: Mean relative difference: 0.00030295"
  819,820c817,818
  < mu -3.0307e+01 9.2728e-06
  < sigma 9.2734e-06 -6.0613e+01
  ---
  > mu -3.0307e+01 9.2731e-06
  > sigma 9.2760e-06 -6.0613e+01
  935,936c933,934
  < mu 1.181 0.182 6.5 8e-11 ***
  < sigma 1.816 0.129 14.1 <2e-16 ***
  ---
  > mu 1.181 0.182 6.5 8.2e-11 ***
  > sigma 1.816 0.128 14.1 < 2e-16 ***
  950c948
  < sigma 1.6679
  ---
  > sigma 1.6727
  953,954c951,952
  < mu -30.297542 0.028422
  < sigma 0.028422 -60.538241
  ---
  > mu -30.269121 0.056843
  > sigma 0.056843 -60.566663
  972,973c970,971
  < mu 3.3006e-02 1.5496e-05
  < sigma 1.5496e-05 1.6518e-02
  ---
  > mu 3.3037e-02 3.1006e-05
  > sigma 3.1006e-05 1.6511e-02
  977,979c975,977
  < [1] "Component 2: Mean relative difference: 6.8052e-05"
  < [2] "Component 3: Mean relative difference: 3592"
  < [3] "Component 4: Mean relative difference: 0.0024984"
  ---
  > [1] "Component 2: Mean relative difference: 6.806e-05"
  > [2] "Component 3: Mean relative difference: 6106.9"
  > [3] "Component 4: Mean relative difference: 0.0028116"
  990c988
  < mu 1.181 0.182 6.5 7.9e-11 ***
  ---
  > mu 1.181 0.182 6.5 8.1e-11 ***
  996,998c994,996
  < [1] "Component 2: Mean relative difference: 9.347e-05"
  < [2] "Component 3: Mean relative difference: 1.6615"
  < [3] "Component 4: Mean relative difference: 0.0025016"
  ---
  > [1] "Component 2: Mean relative difference: 9.3465e-05"
  > [2] "Component 3: Mean relative difference: 1.6617"
  > [3] "Component 4: Mean relative difference: 0.0028125"
  1016c1014
  < [15,] -0.391766 -0.2717778
  ---
  > [15,] -0.391766 -0.2717779
  1024c1022
  < [23,] -0.676787 0.2814119
  ---
  > [23,] -0.676787 0.2814118
  1038c1036
  < [37,] 0.280989 -0.4071430
  ---
  > [37,] 0.280989 -0.4071429
  1097c1095
  < [96,] -0.418693 -0.2321387
  ---
  > [96,] -0.418693 -0.2321388
  1108c1106
  < Initial value of the function : -326.589781090132
  ---
  > Initial value of the function : -326.589781090133
  1138c1136
  < step = 0.015625, lnL = -201.58, chi2 = 5.203e-08, function increment = 2.6043e-10
  ---
  > step = 0.015625, lnL = -201.58, chi2 = 5.203e-08, function increment = 2.6037e-10
  1159,1160c1157,1158
  < [1] "Component 3: Mean relative difference: 1.9416e-05"
  < [2] "Component 4: Mean relative difference: 0.0014764"
  ---
  > [1] "Component 3: Mean relative difference: 0.00012587"
  > [2] "Component 4: Mean relative difference: 0.0021004"
  1164,1165c1162,1163
  < [1] "Component 3: Mean relative difference: 6.6842e-06"
  < [2] "Component 4: Mean relative difference: 0.00067237"
  ---
  > [1] "Component 3: Mean relative difference: 6.4387e-06"
  > [2] "Component 4: Mean relative difference: 0.00065322"
  1277c1275
  < Initial value of the function : -326.589781090132
  ---
  > Initial value of the function : -326.589781090133
  1307c1305
  < step = 0.015625, lnL = -201.58, chi2 = 5.203e-08, function increment = 2.6043e-10
  ---
  > step = 0.015625, lnL = -201.58, chi2 = 5.203e-08, function increment = 2.6037e-10
  1369,1370c1367,1368
  < mu 1.181 0.182 6.5 8.2e-11 ***
  < sigma 1.816 0.128 14.1 < 2e-16 ***
  ---
  > mu 1.181 0.182 6.51 7.7e-11 ***
  > sigma 1.816 0.128 14.15 < 2e-16 ***
  1384c1382
  < sigma 1.6715
  ---
  > sigma 1.6679
  1387,1388c1385,1386
  < mu -30.269121 0.028422
  < sigma 0.028422 -60.623506
  ---
  > mu -30.354386 -0.028422
  > sigma -0.028422 -60.651928
  1404,1405c1402,1403
  < mu 3.3037e-02 1.5489e-05
  < sigma 1.5489e-05 1.6495e-02
  ---
  > mu 3.2944e-02 -1.5438e-05
  > sigma -1.5438e-05 1.6488e-02
  1410,1412c1408,1410
  < [2] "Component 2: Mean relative difference: 6.548e-07"
  < [3] "Component 3: Mean relative difference: 41.721"
  < [4] "Component 4: Mean relative difference: 0.0056127"
  ---
  > [2] "Component 2: Mean relative difference: 6.3918e-07"
  > [3] "Component 3: Mean relative difference: 69.8"
  > [4] "Component 4: Mean relative difference: 0.0028116"
  1429c1427
  < mu 1.181 0.182 6.5 8.1e-11 ***
  ---
  > mu 1.181 0.182 6.5 8.2e-11 ***
  1435,1436c1433,1434
  < [1] "Component 3: Mean relative difference: 0.00063978"
  < [2] "Component 4: Mean relative difference: 0.00125"
  ---
  > [1] "Component 3: Mean relative difference: 0.00040276"
  > [2] "Component 4: Mean relative difference: 0.0046729"
  1561,1562c1559,1560
  < [1] "Component 3: Mean relative difference: 0.00041338"
  < [2] "Component 4: Mean relative difference: 0.0011514"
  ---
  > [1] "Component 3: Mean relative difference: 0.00048382"
  > [2] "Component 4: Mean relative difference: 0.0015721"
  1567c1565
  < [4] "Component 4: Mean relative difference: 2.4728e-06"
  ---
  > [4] "Component 4: Mean relative difference: 2.4729e-06"
  1739,1740c1737,1738
  < mu 1.181 0.182 6.5 8.3e-11 ***
  < sigma 1.817 0.128 14.1 < 2e-16 ***
  ---
  > mu 1.181 0.182 6.5 8.1e-11 ***
  > sigma 1.817 0.129 14.1 < 2e-16 ***
  1754c1752
  < sigma 1.6681
  ---
  > sigma 1.6679
  1757,1758c1755,1756
  < mu -30.269 0.000
  < sigma 0.000 -60.595
  ---
  > mu -30.297542 0.028422
  > sigma 0.028422 -60.538241
  1774,1775c1772,1773
  < mu 0.033037 0.000000
  < sigma 0.000000 0.016503
  ---
  > mu 3.3006e-02 1.5496e-05
  > sigma 1.5496e-05 1.6518e-02
  1780,1782c1778,1780
  < [2] "Component 2: Mean relative difference: 0.00011984"
  < [3] "Component 3: Mean relative difference: 8068.5"
  < [4] "Component 4: Mean relative difference: 0.0015615"
  ---
  > [2] "Component 2: Mean relative difference: 0.00011983"
  > [3] "Component 3: Mean relative difference: 13715"
  > [4] "Component 4: Mean relative difference: 0.0021868"
  1805,1806c1803,1804
  < [1] "Component 3: Mean relative difference: 1.5236e-06"
  < [2] "Component 4: Mean relative difference: 0.0037559"
  ---
  > [1] "Component 3: Mean relative difference: 1.7799e-06"
  > [2] "Component 4: Mean relative difference: 0.0025016"
  1881c1879
  < [72,] -1.454152 3.2909172
  ---
  > [72,] -1.454153 3.2909172
  1931,1932c1929,1930
  < [1] "Component 3: Mean relative difference: 1.7481e-06"
  < [2] "Component 4: Mean relative difference: 0.00059006"
  ---
  > [1] "Component 3: Mean relative difference: 1.8393e-06"
  > [2] "Component 4: Mean relative difference: 0.0013598"
  2097,2098c2095,2096
  < mu 1.182 0.182 6.51 7.6e-11 ***
  < sigma 1.817 0.128 14.15 < 2e-16 ***
  ---
  > mu 1.182 0.182 6.5 7.9e-11 ***
  > sigma 1.817 0.128 14.1 < 2e-16 ***
  2112c2110
  < sigma 1.6667
  ---
  > sigma 1.6727
  2115,2116c2113,2114
  < mu -30.326 0.000
  < sigma 0.000 -60.652
  ---
  > mu -30.269121 0.056843
  > sigma 0.056843 -60.566663
  2132,2133c2130,2131
  < mu 0.032975 0.000000
  < sigma 0.000000 0.016488
  ---
  > mu 3.3037e-02 3.1006e-05
  > sigma 3.1006e-05 1.6511e-02
  2139,2141c2137,2139
  < [3] "Component 2: Mean relative difference: 0.0003349"
  < [4] "Component 3: Mean relative difference: 16334"
  < [5] "Component 4: Mean relative difference: 0.0014052"
  ---
  > [3] "Component 2: Mean relative difference: 0.00033492"
  > [4] "Component 3: Mean relative difference: 27769"
  > [5] "Component 4: Mean relative difference: 0.0028116"
  2158,2159c2156,2157
  < mu 1.182 0.182 6.5 7.8e-11 ***
  < sigma 1.817 0.128 14.1 < 2e-16 ***
  ---
  > mu 1.182 0.182 6.51 7.6e-11 ***
  > sigma 1.817 0.128 14.14 < 2e-16 ***
  2164,2165c2162,2163
  < [1] "Component 3: Mean relative difference: 1.0339e-06"
  < [2] "Component 4: Mean relative difference: 0.0021868"
  ---
  > [1] "Component 3: Mean relative difference: 7.0334e-07"
  > [2] "Component 4: Mean relative difference: 0.001875"
  2290,2291c2288,2289
  < [1] "Component 3: Mean relative difference: 1.0721e-06"
  < [2] "Component 4: Mean relative difference: 0.0014281"
  ---
  > [1] "Component 3: Mean relative difference: 7.2846e-07"
  > [2] "Component 4: Mean relative difference: 0.001384"
  2432,2433c2430,2431
  < mu 1.200 0.181 6.62 3.5e-11 ***
  < sigma 1.813 0.128 14.18 < 2e-16 ***
  ---
  > mu 1.200 0.181 6.62 3.6e-11 ***
  > sigma 1.813 0.128 14.19 < 2e-16 ***
  2441c2439
  < [4] "Component 4: Mean relative difference: 0.0214"
  ---
  > [4] "Component 4: Mean relative difference: 0.022005"
  2497c2495
  < sigma NA -59.97
  ---
  > sigma NA -60.027
  2513c2511
  < sigma 0 0.016675
  ---
  > sigma 0 0.016659
  2539c2537
  < sigma 1.825 0.129 14.1 <2e-16 ***
  ---
  > sigma 1.825 0.129 14.2 <2e-16 ***
  2544,2545c2542,2543
  < [1] "Component 3: Mean relative difference: 0.13281"
  < [2] "Component 4: Mean relative difference: 0.00047393"
  ---
  > [1] "Component 3: Mean relative difference: 0.28906"
  > [2] "Component 4: Mean relative difference: 0.00047348"
  2548c2546
  < NA 2.8422e-08
  ---
  > NA -2.8422e-08
  2551c2549
  < NA 2.4647e-08
  ---
  > NA -3.6637e-08
  2682,2683c2680,2681
  < [1] "Component 3: Mean relative difference: 0.99998"
  < [2] "Component 4: Mean relative difference: 0.00081525"
  ---
  > [1] "Component 3: Mean relative difference: 1"
  > [2] "Component 4: Mean relative difference: 0.00013249"
  2686c2684
  < NA 2.8422e-08
  ---
  > NA -2.8422e-08
  2689c2687
  < NA 5.4712e-13
  ---
  > NA 5.5422e-13
  2693c2691
  < sigma NA -59.97
  ---
  > sigma NA -60.027
  2700,2701c2698,2699
  < [1] "Component 3: Mean relative difference: 0.99998"
  < [2] "Component 4: Mean relative difference: 0.00034115"
  ---
  > [1] "Component 3: Mean relative difference: 1"
  > [2] "Component 4: Mean relative difference: 0.00060569"
  2704c2702
  < NA 2.4647e-08
  ---
  > NA -3.6637e-08
  2707c2705
  < NA 5.4839e-13
  ---
  > NA 5.5395e-13
  2711c2709
  < sigma NA -59.998
  ---
  > sigma NA -60.055
  2910,2911c2908,2909
  < [1] "Component 2: Mean relative difference: 7.6899e-08"
  < [2] "Component 3: Mean relative difference: 298.54"
  ---
  > [1] "Component 2: Mean relative difference: 7.6903e-08"
  > [2] "Component 3: Mean relative difference: 295.63"
  2913c2911
  < [4] "Component 4: Mean relative difference: 0.066481"
  ---
  > [4] "Component 4: Mean relative difference: 0.067365"
  2916c2914
  < NA 2.8422e-08
  ---
  > NA -2.8422e-08
  2919c2917
  < NA -8.4566e-06
  ---
  > NA -8.4308e-06
  2923c2921
  < sigma NA -59.97
  ---
  > sigma NA -60.027
  3071c3069
  < [1] "Component 3: Mean relative difference: 0.0011859"
  ---
  > [1] "Component 3: Mean relative difference: 0.0018656"
  3126c3124
  < mu -30.0133 -5.9401
  ---
  > mu -29.9849 -5.9401
  3153,3154c3151,3152
  < [1] "Component 3: Mean relative difference: 8.7205e-08"
  < [2] "Component 4: Mean relative difference: 0.0011154"
  ---
  > [1] "Component 3: Mean relative difference: 9.6699e-08"
  > [2] "Component 4: Mean relative difference: 0.0011158"
  3283c3281
  < BFGS maximisation, 27 iterations
  ---
  > BFGS maximisation, 29 iterations
  3295c3293,3294
  < [1] "Component 4: Mean relative difference: 0.00020974"
  ---
  > [1] "Component 3: Mean relative difference: 9.379e-08"
  > [2] "Component 4: Mean relative difference: 0.00041067"
  3299c3298
  < [1] TRUE
  ---
  > [1] "Component 3: Mean relative difference: 1.6539e-08"
  3313c3312
  < [11,] 0.7346779 0.437486
  ---
  > [11,] 0.7346780 0.437486
  3328c3327
  < [26,] -1.0123313 1.322948
  ---
  > [26,] -1.0123314 1.322948
  3335c3334
  < [33,] 0.5372428 -0.020927
  ---
  > [33,] 0.5372428 -0.020926
  3372c3371
  < [70,] 1.2304341 2.215876
  ---
  > [70,] 1.2304341 2.215877
  3402c3401
  < [100,] -0.6160444 0.144973
  ---
  > [100,] -0.6160445 0.144973
  3482,3483c3481,3482
  < mu -30.0133 -5.9401
  < sigma -5.9401 -60.0551
  ---
  > mu -30.0417 -5.9686
  > sigma -5.9686 -60.0551
  3505,3506c3504,3505
  < [2] "Component 3: Mean relative difference: 0.0008126"
  < [3] "Component 4: Mean relative difference: 0.00047348"
  ---
  > [2] "Component 3: Mean relative difference: 0.00081259"
  > [3] "Component 4: Mean relative difference: 0.0013947"
  3514c3513
  < [1] "Component 4: Mean relative difference: 0.0020353"
  ---
  > [1] TRUE
  3676c3675
  < [1] "Component 4: Mean relative difference: 0.00037194"
  ---
  > [1] "Component 4: Mean relative difference: 0.00099652"
  3860c3859
  < sigma -5.9401 -60.0267
  ---
  > sigma -5.9401 -59.9982
  3877c3876
  < sigma 0 0.016659
  ---
  > sigma 0 0.016667
  3881,3883c3880,3882
  < [1] "Component 2: Mean relative difference: 8.9402e-06"
  < [2] "Component 3: Mean relative difference: 0.00019841"
  < [3] "Component 4: Mean relative difference: 0.00094697"
  ---
  > [1] "Component 2: Mean relative difference: 8.9399e-06"
  > [2] "Component 3: Mean relative difference: 0.00019839"
  > [3] "Component 4: Mean relative difference: 0.00047348"
  3887c3886
  < [1] "Component 4: Mean relative difference: 0.00063151"
  ---
  > [1] "Component 4: Mean relative difference: 0.00094757"
  4013c4012
  < [1] "Component 4: Mean relative difference: 0.00039275"
  ---
  > [1] "Component 4: Mean relative difference: 0.00056838"
  4165,4166c4164,4165
  < mu 0.820 0.174 4.71 2.5e-06 ***
  < sigma 1.680 0.107 15.69 < 2e-16 ***
  ---
  > mu 0.820 0.174 4.7 2.5e-06 ***
  > sigma 1.680 0.107 15.7 < 2e-16 ***
  4184c4183
  < sigma 3.6106
  ---
  > sigma 3.6086
  4187,4188c4186,4187
  < mu -35.442 -15.234
  < sigma -15.234 -93.706
  ---
  > mu -35.413 -15.206
  > sigma -15.206 -93.621
  4204,4205c4203,4204
  < mu 0.0303350 -0.0049316
  < sigma -0.0049316 0.0114734
  ---
  > mu 0.0303547 -0.0049301
  > sigma -0.0049301 0.0114821
  4219,4220c4218,4219
  < mu 0.820 0.174 4.71 2.5e-06 ***
  < sigma 1.680 0.107 15.69 < 2e-16 ***
  ---
  > mu 0.820 0.174 4.7 2.6e-06 ***
  > sigma 1.680 0.107 15.7 < 2e-16 ***
  4229,4231c4228,4230
  < [1] "Component 3: Mean relative difference: 1.4957e-08"
  < [2] "Component 4: Mean relative difference: 0.00071225"
  < [3] "Component 11: Component 2: Mean relative difference: 7.1367e-07"
  ---
  > [1] "Component 3: Mean relative difference: 2.0253e-08"
  > [2] "Component 4: Mean relative difference: 0.00066079"
  > [3] "Component 11: Component 2: Mean relative difference: 7.9943e-07"
  4343,4346c4342,4345
  < [1] "Component 2: Mean relative difference: 2.7021e-08"
  < [2] "Component 3: Mean relative difference: 1.3164e-07"
  < [3] "Component 4: Mean relative difference: 0.00048736"
  < [4] "Component 11: Component 2: Mean relative difference: 4.8053e-06"
  ---
  > [1] "Component 2: Mean relative difference: 2.6426e-08"
  > [2] "Component 3: Mean relative difference: 1.2831e-07"
  > [3] "Component 4: Mean relative difference: 0.00058164"
  > [4] "Component 11: Component 2: Mean relative difference: 4.753e-06"
  4483,4484c4482,4483
  < mu 0.820 0.174 4.71 2.5e-06 ***
  < sigma 1.680 0.107 15.68 < 2e-16 ***
  ---
  > mu 0.820 0.174 4.7 2.6e-06 ***
  > sigma 1.680 0.107 15.7 < 2e-16 ***
  4502c4501
  < sigma 3.61
  ---
  > sigma 3.6128
  4505,4506c4504,4505
  < mu -35.442 -15.234
  < sigma -15.234 -93.678
  ---
  > mu -35.385 -15.206
  > sigma -15.206 -93.678
  4522,4523c4521,4522
  < mu 0.0303357 -0.0049332
  < sigma -0.0049332 0.0114771
  ---
  > mu 0.0303795 -0.0049311
  > sigma -0.0049311 0.0114753
  4528,4530c4527,4529
  < [2] "Component 2: Mean relative difference: 5.2841e-06"
  < [3] "Component 3: Mean relative difference: 2.6948e-05"
  < [4] "Component 4: Mean relative difference: 0.00030331"
  ---
  > [2] "Component 2: Mean relative difference: 5.2847e-06"
  > [3] "Component 3: Mean relative difference: 2.6951e-05"
  > [4] "Component 4: Mean relative difference: 0.00066079"
  4546c4545
  < sigma 1.680 0.107 15.69 < 2e-16 ***
  ---
  > sigma 1.680 0.107 15.68 < 2e-16 ***
  4555c4554
  < [1] "Component 4: Mean relative difference: 0.00091575"
  ---
  > [1] "Component 4: Mean relative difference: 0.0017279"
  4667c4666
  < [1] "Component 4: Mean relative difference: 0.00032168"
  ---
  > [1] "Component 4: Mean relative difference: 0.00048537"
  4740c4739
  < [4] "Component 4: Mean relative difference: 0.019765"
  ---
  > [4] "Component 4: Mean relative difference: 0.020143"
  4763c4762
  < mu 0.812 0.175 4.65 3.4e-06 ***
  ---
  > mu 0.812 0.175 4.64 3.4e-06 ***
  4776c4775
  < [4] "Component 4: Mean relative difference: 0.026157"
  ---
  > [4] "Component 4: Mean relative difference: 0.026522"
  4800c4799
  < sigma 1.680 0.107 15.68 < 2e-16 ***
  ---
  > sigma 1.680 0.107 15.69 < 2e-16 ***
  4820c4819
  < sigma 3.6139
  ---
  > sigma 3.6106
  4823,4824c4822,4823
  < mu -35.442 -15.262
  < sigma -15.262 -93.706
  ---
  > mu -35.442 -15.234
  > sigma -15.234 -93.706
  4839,4840c4838,4839
  < mu 0.0303435 -0.0049422
  < sigma -0.0049422 0.0114766
  ---
  > mu 0.0303350 -0.0049316
  > sigma -0.0049316 0.0114734
  4854c4853
  < sigma 1.680 0.107 15.69 < 2e-16 ***
  ---
  > sigma 1.680 0.107 15.68 < 2e-16 ***
  4865c4864
  < [1] "Component 4: Mean relative difference: 0.0018622"
  ---
  > [1] "Component 4: Mean relative difference: 0.00060661"
  5001c5000
  < [4] "Component 4: Mean relative difference: 0.025143"
  ---
  > [4] "Component 4: Mean relative difference: 0.024796"
  5011c5010
  < [4] "Component 4: Mean relative difference: 0.024796"
  ---
  > [4] "Component 4: Mean relative difference: 0.025161"
  5022c5021
  < [1] TRUE
  ---
  > [1] "Component 11: Component 2: Mean relative difference: 4.9945e-08"
  5136c5135
  < [4] "Component 4: Mean relative difference: 0.024948"
  ---
  > [4] "Component 4: Mean relative difference: 0.024595"
  5152c5151
  < [2] "Component 11: Component 2: Mean relative difference: 2.305e-08"
  ---
  > [2] "Component 11: Component 2: Mean relative difference: 5.8452e-08"
  5162c5161
  < [4] "Component 4: Mean relative difference: 0.024948"
  ---
  > [4] "Component 4: Mean relative difference: 0.024595"
  5194c5193
  < sigma 1.680 0.107 15.68 < 2e-16 ***
  ---
  > sigma 1.680 0.107 15.69 < 2e-16 ***
  5214c5213
  < sigma 3.6062
  ---
  > sigma 3.6106
  5217,5218c5216,5217
  < mu -35.442 -15.206
  < sigma -15.206 -93.650
  ---
  > mu -35.442 -15.234
  > sigma -15.234 -93.706
  5233,5234c5232,5233
  < mu 0.0303279 -0.0049243
  < sigma -0.0049243 0.0114776
  ---
  > mu 0.0303350 -0.0049316
  > sigma -0.0049316 0.0114734
  5240d5238
  < [3] "Component 4: Mean relative difference: 0.0013727"
  5377c5375
  < [4] "Component 4: Mean relative difference: 0.027946"
  ---
  > [4] "Component 4: Mean relative difference: 0.027926"
  5450c5448
  < BFGS maximisation, 31 iterations
  ---
  > BFGS maximisation, 33 iterations
  5457c5455
  < BFGS maximisation, 31 iterations
  ---
  > BFGS maximisation, 33 iterations
  5464c5462
  < sigma 1.680 0.107 15.68 < 2e-16 ***
  ---
  > sigma 1.680 0.107 15.69 < 2e-16 ***
  5472c5470
  < 10 outer iterations, barrier value 2.07e-10
  ---
  > 10 outer iterations, barrier value 2.0699e-10
  5484c5482
  < sigma 3.6092
  ---
  > sigma 3.6098
  5488c5486
  < sigma -15.206 -93.650
  ---
  > sigma -15.206 -93.678
  5495c5493
  < 31
  ---
  > 33
  5504,5505c5502,5503
  < mu 0.0303540 -0.0049285
  < sigma -0.0049285 0.0114783
  ---
  > mu 0.0303533 -0.0049269
  > sigma -0.0049269 0.0114746
  5509c5507
  < [1] "Component 4: Mean relative difference: 0.0012475"
  ---
  > [1] "Component 4: Mean relative difference: 0.00071276"
  5521,5522c5519,5520
  < mu 0.820 0.174 4.7 2.5e-06 ***
  < sigma 1.680 0.107 15.7 < 2e-16 ***
  ---
  > mu 0.820 0.174 4.71 2.5e-06 ***
  > sigma 1.680 0.107 15.68 < 2e-16 ***
  5533c5531,5532
  < [1] "Component 4: Mean relative difference: 0.00068729"
  ---
  > [1] "Component 4: Mean relative difference: 0.0003034"
  > [2] "Component 9: Mean relative difference: 0.060606"
  5668,5669c5667,5668
  < [4] "Component 4: Mean relative difference: 0.027441"
  < [5] "Component 9: Mean relative difference: 0.032258"
  ---
  > [4] "Component 4: Mean relative difference: 0.027257"
  > [5] "Component 9: Mean relative difference: 0.090909"
  5854c5853
  < [3] "Component 4: Mean relative difference: 0.0012475"
  ---
  > [3] "Component 4: Mean relative difference: 0.00089111"
  5878c5877
  < [1] "Component 4: Mean relative difference: 0.00091638"
  ---
  > [1] TRUE
  6145c6144
  < sigma 3.615
  ---
  > sigma 3.6159
  6148,6149c6147,6148
  < mu -35.243 -15.262
  < sigma -15.262 -92.768
  ---
  > mu -35.271 -15.291
  > sigma -15.291 -92.797
  6165,6166c6164,6165
  < mu 0.0305512 -0.0050264
  < sigma -0.0050264 0.0116065
  ---
  > mu 0.0305327 -0.0050311
  > sigma -0.0050311 0.0116052
  6173c6172
  < [4] "Component 4: Mean relative difference: 0.0073503"
  ---
  > [4] "Component 4: Mean relative difference: 0.0075242"
  6180c6179
  < [1] "Component 4: Mean relative difference: 0.00047198"
  ---
  > [1] "Component 4: Mean relative difference: 0.00024494"
  6187c6186
  < problem in imposing equality constraints: the constraints are not satisfied (barrier value = 0.254780368286163). Try setting 'SUMTTol' to 0
  ---
  > problem in imposing equality constraints: the constraints are not satisfied (barrier value = 0.254780368286165). Try setting 'SUMTTol' to 0
  6221,6227c6220
  <
  < Attaching package: 'zoo'
  <
  < The following object(s) are masked from 'package:base':
  <
  < as.Date, as.Date.numeric
  <
  ---
  > Warning: locked binding of 'as.Date.numeric' will not be changed
  6457c6450
  < sigma 0.0000 1.6488
  ---
  > sigma 0.0000 1.6503
  6460,6461c6453,6454
  < mu 3.2996e+00 -8.4565e-11
  < sigma -8.4565e-11 1.6498e+00
  ---
  > mu 3.2996e+00 -7.7766e-11
  > sigma -7.7766e-11 1.6498e+00
  6472c6465
  < mu 3.3006 0.0000
  ---
  > mu 3.3037 0.0000
  6480,6481c6473,6474
  < mu 3.2975059 -0.0015467
  < sigma -0.0015467 1.6502996
  ---
  > mu 3.2975059 -0.0015459
  > sigma -0.0015459 1.6495259
  6488,6489c6481,6482
  < mu 3.3006036 0.0030963
  < sigma 0.0030963 1.6503018
  ---
  > mu 3.2975059 0.0015459
  > sigma 0.0015459 1.6495259
  6497c6490
  < sigma 0 1.6667
  ---
  > sigma 0 1.6651
  6513c6506
  < sigma 0 1.6667
  ---
  > sigma 0 1.6651
  6529c6522
  < sigma 0 1.6667
  ---
  > sigma 0 1.6659
  6536,6537c6529,6530
  < mu 3.03533 -0.49269
  < sigma -0.49269 1.14746
  ---
  > mu 3.03795 -0.49311
  > sigma -0.49311 1.14753
  6544,6545c6537,6538
  < mu 3.03428 -0.49406
  < sigma -0.49406 1.14729
  ---
  > mu 3.03357 -0.49332
  > sigma -0.49332 1.14771
  6548,6549c6541,6542
  < mu 3.03350 -0.49316
  < sigma -0.49316 1.14734
  ---
  > mu 3.03364 -0.49348
  > sigma -0.49348 1.14809
  6556,6557c6549,6550
  < mu 3.03279 -0.49243
  < sigma -0.49243 1.14776
  ---
  > mu 3.03350 -0.49316
  > sigma -0.49316 1.14734
  6564,6565c6557,6558
  < mu 3.03618 -0.49375
  < sigma -0.49375 1.14778
  ---
  > mu 3.03540 -0.49285
  > sigma -0.49285 1.14783
  6572,6573c6565,6566
  < mu 3.03612 -0.49359
  < sigma -0.49359 1.14741
  ---
  > mu 3.03540 -0.49285
  > sigma -0.49285 1.14783
  6590,6592c6583,6585
  < mu 0.03301594 0.00099779
  < sigma 0.00099779 0.01515020
  < [1] "Mean relative difference: 0.066642"
  ---
  > mu 0.03301594 0.00099872
  > sigma 0.00099872 0.01517864
  > [1] "Mean relative difference: 0.06638"
  6610,6612c6603,6605
  < mu 0.03301589 0.00099781
  < sigma 0.00099781 0.01515017
  < [1] "Mean relative difference: 0.066642"
  ---
  > mu 0.03307792 0.00099874
  > sigma 0.00099874 0.01515017
  > [1] "Mean relative difference: 0.067213"
  6620,6622c6613,6615
  < mu 0.03294097 0.00097139
  < sigma 0.00097139 0.01517015
  < [1] "Mean relative difference: 0.066741"
  ---
  > mu 0.03294097 0.00097094
  > sigma 0.00097094 0.01515593
  > [1] "Mean relative difference: 0.066872"
  6630,6632c6623,6625
  < mu 0.0330170 0.0010405
  < sigma 0.0010405 0.0151776
  < [1] "Mean relative difference: 0.066742"
  ---
  > mu 0.0329532 0.0010094
  > sigma 0.0010094 0.0151624
  > [1] "Mean relative difference: 0.066672"
  6661,6662c6654,6655
  < sigma 0 0.015552
  < [1] "Mean relative difference: 0.071723"
  ---
  > sigma 0 0.015522
  > [1] "Mean relative difference: 0.072738"
  6681,6682c6674,6675
  < sigma 0 0.015553
  < [1] "Mean relative difference: 0.071666"
  ---
  > sigma 0 0.015538
  > [1] "Mean relative difference: 0.072173"
  6690,6692c6683,6685
  < mu 0.0354661 -0.0038744
  < sigma -0.0038744 0.0117841
  < [1] "Mean relative difference: 0.13686"
  ---
  > mu 0.0355274 -0.0038827
  > sigma -0.0038827 0.0117852
  > [1] "Mean relative difference: 0.13716"
  6700,6702c6693,6695
  < mu 0.0354355 -0.0039057
  < sigma -0.0039057 0.0117790
  < [1] "Mean relative difference: 0.13573"
  ---
  > mu 0.0354210 -0.0038887
  > sigma -0.0038887 0.0117885
  > [1] "Mean relative difference: 0.13614"
  6705,6707c6698,6700
  < mu 0.0354212 -0.0038865
  < sigma -0.0038865 0.0117814
  < [1] "Mean relative difference: 0.13614"
  ---
  > mu 0.0354234 -0.0038924
  > sigma -0.0038924 0.0117967
  > [1] "Mean relative difference: 0.13613"
  6715,6717c6708,6710
  < mu 0.0354202 -0.0038734
  < sigma -0.0038734 0.0117974
  < [1] "Mean relative difference: 0.1367"
  ---
  > mu 0.0354347 -0.0038904
  > sigma -0.0038904 0.0117879
  > [1] "Mean relative difference: 0.1363"
  6725,6727c6718,6720
  < mu 0.0354834 -0.0038978
  < sigma -0.0038978 0.0117901
  < [1] "Mean relative difference: 0.13643"
  ---
  > mu 0.0354679 -0.0038779
  > sigma -0.0038779 0.0117920
  > [1] "Mean relative difference: 0.13685"
  6735,6737c6728,6730
  < mu 0.0354776 -0.0038935
  < sigma -0.0038935 0.0117801
  < [1] "Mean relative difference: 0.13638"
  ---
  > mu 0.0354631 -0.0038765
  > sigma -0.0038765 0.0117897
  > [1] "Mean relative difference: 0.13679"
  Running ‘methods.R’
  Comparing ‘methods.Rout’ to ‘methods.Rout.save’ ... OK
  Running ‘numericGradient.R’
  Comparing ‘numericGradient.Rout’ to ‘numericGradient.Rout.save’ ... OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/ripley/R/packages/tests32/maxLik.Rcheck/00check.log’
  for details.