• using R version 2.14.1 Patched (2011-12-30 r58031)
• using platform: sparc-sun-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘lodplot/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘lodplot’ version ‘1.1’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... NOTE
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
• checking for .dll and .exe files ... OK
• checking whether package ‘lodplot’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  chromosome.viewlinkage: no visible binding for global variable
  ‘chrom.bands’
  chromosome.viewsequence: no visible binding for global variable
  ‘chrom.bands’
  paint.chromosome: no visible binding for global variable ‘chrom.bands’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'plot.scan':
  ‘plot.scan’
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter ‘Writing R documentation files’ in the ‘Writing R
  Extensions’ manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... WARNING
  Warning: large data file(s) saved inefficiently:
  size ASCII compress
  chrom.bands.rda 393Kb FALSE none
  
  Note: significantly better compression could be obtained
  by using R CMD build --resave-data
  old_size new_size compress
  chrom.bands.rda 393Kb 47Kb xz
• checking examples ... OK
• checking PDF version of manual ... OK
  WARNING: There was 1 warning, see
  ‘/home/ripley/R/packages/tests32/lodplot.Rcheck/00check.log’
  for details