• using R version 3.0.1 Patched (2013-05-18 r62762)
  • using platform: sparc-sun-solaris2.10 (32-bit)
  • using session charset: UTF-8
  • checking for file ‘lme4/DESCRIPTION’ ... OK
  • this is package ‘lme4’ version ‘0.999999-2’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘lme4’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking loading without being on the library search path ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable compilation flags in Makevars ... OK
  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking compiled code ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking examples ... [127s/127s] OK
  • checking for unstated dependencies in tests ... OK
  • checking tests ... [11m/11m] OK
    Running ‘Gamma.R’ [46s/46s]
    Running ‘agq.R’ [31s/31s]
    Running ‘coefs.R’ [28s/28s]
    Running ‘drop.R’ [30s/30s]
    Running ‘extras.R’
    Running ‘getME.R’ [30s/30s]
    Running ‘lmList.R’ [30s/30s]
    Running ‘lmer-1.R’ [51s/51s]
    Comparing ‘lmer-1.Rout’ to ‘lmer-1.Rout.save’ ...442c442
    < 140.642 -1.424 -1.424 0.014
    ---
    > 140.641 -1.424 -1.424 0.014
    459,461c459,461
    < [1,] 7.19e+00
    < [2,] 8.77e-12
    < [3,] -1.01e-02
    ---
    > [1,] 7.1868
    > [2,] 0.0000
    > [3,] -0.0101
    473c473
    < 1 0 300 900 5
    ---
    > 1 0 300 900 4
    515c515
    < Error in (function (fr, FL, start, REML, verbose) :
    ---
    > Error in function (fr, FL, start, REML, verbose) :
    Running ‘lmer-conv.R’ [29s/29s]
    Running ‘lmer.R’ [27s/27s]
    Running ‘nlmer-conv.R’ [144s/144s]
    Running ‘nlmer.R’ [144s/144s]
    Comparing ‘nlmer.Rout’ to ‘nlmer.Rout.save’ ...30,33c30,33
    < Subject lKe 5.01e-13 7.08e-07
    < lKa 2.27e-01 4.77e-01 0.000
    < lCl 1.57e-02 1.25e-01 0.000 -0.012
    < Residual 5.92e-01 7.69e-01
    ---
    > Subject lKe 0.0000 0.000
    > lKa 0.2274 0.477 NaN
    > lCl 0.0157 0.125 NaN -0.012
    > Residual 0.5917 0.769
    60,62c60,62
    < Subject lKa 0.227492 0.47696
    < Subject lCl 0.015739 0.12545
    < Residual 0.591691 0.76921
    ---
    > Subject lKa 0.227490 0.47696
    > Subject lCl 0.015738 0.12545
    > Residual 0.591692 0.76921
    Running ‘sigma.R’ [27s/27s]
    Running ‘simulate.R’ [41s/41s]
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... [60s/60s] OK
  • checking re-building of vignette PDFs ... [61s/61s] OK
  • checking PDF version of manual ... OK