• using R version 2.15.0 Patched (2012-03-31 r58888)
• using platform: sparc-sun-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘lme4/DESCRIPTION’ ... OK
• this is package ‘lme4’ version ‘0.999375-42’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for .dll and .exe files ... OK
• checking whether package ‘lme4’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  nlmer : <anonymous>: warning in assign(nm, env = env, mf[[nm]]):
  partial argument match of 'env' to 'envir'
  nlmer : <anonymous>: warning in assign(nm, env = env,
  rep(start$fixef[[nm]], length.out = n)): partial argument match of
  'env' to 'envir'
  printMer: warning in abbreviate(rn, minlen = 11): partial argument
  match of 'minlen' to 'minlength'
  printMer: warning in matrix(format(round(corF@x, 3), nsmall = 3), nc =
  p, dimnames = list(rns, abbreviate(rn, minlen = 6))): partial
  argument match of 'nc' to 'ncol'
  printMer: warning in abbreviate(rn, minlen = 6): partial argument match
  of 'minlen' to 'minlength'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [122s/122s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [533s/534s] OK
  Running ‘Gamma.R’ [45s/45s]
  Running ‘drop.R’ [31s/31s]
  Running ‘extras.R’
  Running ‘lmer-1.R’ [51s/51s]
  Comparing ‘lmer-1.Rout’ to ‘lmer-1.Rout.save’ ...432c432
  < group (Intercept) 140.641530 11.85924
  ---
  > group (Intercept) 140.641531 11.85924
  458,460c458,460
  < [1,] 7.186787e+00
  < [2,] 8.769343e-12
  < [3,] -1.012811e-02
  ---
  > [1,] 7.18678711
  > [2,] 0.00000000
  > [3,] -0.01012811
  484,485c484,485
  < [1,] -8.35048129
  < [2,] 8.35048129
  ---
  > [1,] -8.35048135
  > [2,] 8.35048135
  Running ‘lmer-conv.R’ [29s/29s]
  Running ‘lmer.R’ [27s/27s]
  Running ‘nlmer-conv.R’ [150s/150s]
  Running ‘nlmer.R’ [150s/150s]
  Comparing ‘nlmer.Rout’ to ‘nlmer.Rout.save’ ...6d5
  < > ## TODO: nicer version of this is in system.file("test-tools.R", package = "Matrix")
  29,32c28,31
  < Subject lKe 5.0122e-13 7.0797e-07
  < lKa 2.2736e-01 4.7683e-01 0.000
  < lCl 1.5722e-02 1.2539e-01 0.000 -0.012
  < Residual 5.9172e-01 7.6923e-01
  ---
  > Subject lKe 0.000000 0.00000
  > lKa 0.227357 0.47682 NaN
  > lCl 0.015722 0.12539 NaN -0.012
  > Residual 0.591716 0.76923
  39c38
  < lCl -3.23552 0.05235 -61.80
  ---
  > lCl -3.23551 0.05235 -61.80
  58,60c57,59
  < Subject lKa 0.227492 0.47696
  < Subject lCl 0.015739 0.12545
  < Residual 0.591691 0.76921
  ---
  > Subject lKa 0.227493 0.47696
  > Subject lCl 0.015738 0.12545
  > Residual 0.591689 0.76921
  67c66
  < lCl -3.23538 0.05236 -61.79
  ---
  > lCl -3.23539 0.05236 -61.79
  Running ‘simulate.R’ [47s/47s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [60s/60s] OK
• checking re-building of vignette PDFs ... [102s/100s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/ripley/R/packages/tests32/lme4.Rcheck/00check.log’
  for details.