- using R version 2.15.0 Patched (2012-03-31 r58888)
- using platform: sparc-sun-solaris2.10 (32-bit)
- using session charset: UTF-8
- checking for file ‘lme4/DESCRIPTION’ ... OK
- this is package ‘lme4’ version ‘0.999375-42’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for .dll and .exe files ... OK
- checking whether package ‘lme4’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
nlmer : <anonymous>: warning in assign(nm, env = env, mf[[nm]]):
partial argument match of 'env' to 'envir'
nlmer : <anonymous>: warning in assign(nm, env = env,
rep(start$fixef[[nm]], length.out = n)): partial argument match of
'env' to 'envir'
printMer: warning in abbreviate(rn, minlen = 11): partial argument
match of 'minlen' to 'minlength'
printMer: warning in matrix(format(round(corF@x, 3), nsmall = 3), nc =
p, dimnames = list(rns, abbreviate(rn, minlen = 6))): partial
argument match of 'nc' to 'ncol'
printMer: warning in abbreviate(rn, minlen = 6): partial argument match
of 'minlen' to 'minlength'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable compilation flags in Makevars ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking examples ... [122s/122s] OK
- checking for unstated dependencies in tests ... OK
- checking tests ... [533s/534s] OK
Running ‘Gamma.R’ [45s/45s]
Running ‘drop.R’ [31s/31s]
Running ‘extras.R’
Running ‘lmer-1.R’ [51s/51s]
Comparing ‘lmer-1.Rout’ to ‘lmer-1.Rout.save’ ...432c432
< group (Intercept) 140.641530 11.85924
---
> group (Intercept) 140.641531 11.85924
458,460c458,460
< [1,] 7.186787e+00
< [2,] 8.769343e-12
< [3,] -1.012811e-02
---
> [1,] 7.18678711
> [2,] 0.00000000
> [3,] -0.01012811
484,485c484,485
< [1,] -8.35048129
< [2,] 8.35048129
---
> [1,] -8.35048135
> [2,] 8.35048135
Running ‘lmer-conv.R’ [29s/29s]
Running ‘lmer.R’ [27s/27s]
Running ‘nlmer-conv.R’ [150s/150s]
Running ‘nlmer.R’ [150s/150s]
Comparing ‘nlmer.Rout’ to ‘nlmer.Rout.save’ ...6d5
< > ## TODO: nicer version of this is in system.file("test-tools.R", package = "Matrix")
29,32c28,31
< Subject lKe 5.0122e-13 7.0797e-07
< lKa 2.2736e-01 4.7683e-01 0.000
< lCl 1.5722e-02 1.2539e-01 0.000 -0.012
< Residual 5.9172e-01 7.6923e-01
---
> Subject lKe 0.000000 0.00000
> lKa 0.227357 0.47682 NaN
> lCl 0.015722 0.12539 NaN -0.012
> Residual 0.591716 0.76923
39c38
< lCl -3.23552 0.05235 -61.80
---
> lCl -3.23551 0.05235 -61.80
58,60c57,59
< Subject lKa 0.227492 0.47696
< Subject lCl 0.015739 0.12545
< Residual 0.591691 0.76921
---
> Subject lKa 0.227493 0.47696
> Subject lCl 0.015738 0.12545
> Residual 0.591689 0.76921
67c66
< lCl -3.23538 0.05236 -61.79
---
> lCl -3.23539 0.05236 -61.79
Running ‘simulate.R’ [47s/47s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [60s/60s] OK
- checking re-building of vignette PDFs ... [102s/100s] OK
- checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/home/ripley/R/packages/tests32/lme4.Rcheck/00check.log’
for details.