- using R version 2.15.0 Patched (2012-03-31 r58888)
- using platform: sparc-sun-solaris2.10 (32-bit)
- using session charset: UTF-8
- checking for file ‘lasso2/DESCRIPTION’ ... OK
- this is package ‘lasso2’ version ‘1.2-12’
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
CRAN requires a NAMESPACE file for all submissions.
- checking for .dll and .exe files ... OK
- checking whether package ‘lasso2’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
File ‘lasso2/R/First.lib.q’:
.First.lib calls:
cat("R Package to solve regression problems while imposing", "\t an L1 constraint on the parameters. Based on S-plus Release 2.1", "Copyright (C) 1998, 1999", "Justin Lokhorst <jlokhors@stats.adelaide.edu.au>", "Berwin A. Turlach <bturlach@stats.adelaide.edu.au>", "Bill Venables <wvenable@stats.adelaide.edu.au>\n", "Copyright (C) 2002", "Martin Maechler <maechler@stat.math.ethz.ch>\n", sep = "\n")
Package startup functions should use ‘packageStartupMessage’ to
generate messages.
See section ‘Good practice’ in ?.onAttach.
gl1ce: warning in match.call(expand = FALSE): partial argument match of
'expand' to 'expand.dots'
gl1ce: warning in assign("dev.res", family$dev.res, env = ee): partial
argument match of 'env' to 'envir'
l1ce: warning in match.call(expand = FALSE): partial argument match of
'expand' to 'expand.dots'
gl1ce : <anonymous>: no visible global function definition for
‘dev.res’
gl1ce: no visible binding for global variable ‘mustart’
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... NOTE
File ‘/home/ripley/R/Lib32/lasso2/libs/lasso2.so’:
Found ‘printf’, possibly from ‘printf’ (C)
Object: ‘lasso.o’
Found ‘putchar’, possibly from ‘putchar’ (C)
Object: ‘lasso.o’
Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
- checking installed files from ‘inst/doc’ ... NOTE
The following files should probably not be installed:
‘Manual-vignette.tex’
Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
- checking examples ... OK
- checking for unstated dependencies in tests ... OK
- checking tests ... [12s/12s] OK
Running ‘l1ce-tst.R’
Comparing ‘l1ce-tst.Rout’ to ‘l1ce-tst.Rout.save’ ...183,199c183,199
< [1,] 0.00000000 0.00000000 0.0000000000
< [2,] 0.00000000 0.00000000 0.0000000000
< [3,] 0.00000000 0.00000000 0.0000000000
< [4,] 0.00000000 0.00000000 0.0000000000
< [5,] 0.00000000 0.00000000 0.0000000000
< [6,] 0.00000000 0.00000000 0.0000000000
< [7,] 0.00000000 0.00000000 0.0000000000
< [8,] 0.00000000 0.00000000 0.0000000000
< [9,] 0.00000000 0.00000000 0.0001812107
< [10,] 0.00000000 0.00000000 0.0009116063
< [11,] 0.00000000 0.00000000 0.0016192221
< [12,] 0.00000000 0.00000000 0.0022257752
< [13,] -0.00166150 0.01304748 0.0025835545
< [14,] -0.02761452 0.02106960 0.0030689967
< [15,] -0.05356754 0.02909172 0.0035544390
< [16,] -0.07952055 0.03711384 0.0040398813
< [17,] -0.10547357 0.04513596 0.0045253236
---
> [1,] 0.000000000 0.00000000 0.0000000000
> [2,] 0.000000000 0.00000000 0.0000000000
> [3,] 0.000000000 0.00000000 0.0000000000
> [4,] 0.000000000 0.00000000 0.0000000000
> [5,] 0.000000000 0.00000000 0.0000000000
> [6,] 0.000000000 0.00000000 0.0000000000
> [7,] 0.000000000 0.00000000 0.0000000000
> [8,] 0.000000000 0.00000000 0.0000000000
> [9,] 0.000000000 0.00000000 0.0001812107
> [10,] 0.000000000 0.00000000 0.0009116063
> [11,] 0.000000000 0.00000000 0.0016192221
> [12,] 0.000000000 0.00000000 0.0022257752
> [13,] -0.001661500 0.01304748 0.0025835545
> [14,] -0.027614518 0.02106960 0.0030689967
> [15,] -0.053567535 0.02909172 0.0035544390
> [16,] -0.079520552 0.03711384 0.0040398813
> [17,] -0.105473570 0.04513596 0.0045253236
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... OK
- checking re-building of vignette PDFs ... OK
- checking PDF version of manual ... OK
NOTE: There were 4 notes.
See
‘/home/ripley/R/packages/tests32/lasso2.Rcheck/00check.log’
for details.