Check results for 'ergm'

using R version 2.15.0 Patched (2012-04-30 r59290)
using platform: sparc-sun-solaris2.10 (32-bit)
using session charset: UTF-8
checking for file ‘ergm/DESCRIPTION’ ... OK
this is package ‘ergm’ version ‘3.0-1’
checking package namespace information ... OK
checking package dependencies ... NOTE
Package suggested but not available for checking: ‘latentnet’
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for .dll and .exe files ... OK
checking whether package ‘ergm’ can be installed ... OK
checking installed package size ... OK
checking package directory ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking for unstated dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... NOTE
stergm.EGMME.SA : do.optimization: no visible binding for global
variable ‘oh’
stergm.EGMME.SA : do.optimization: no visible binding for global
variable ‘oh.last’
stergm.EGMME.SA : eval.optpars: no visible binding for global variable
‘oh.last’
stergm.EGMME.SA : eval.optpars: no visible binding for global variable
‘oh’
stergm.EGMME.SA : eval.optpars: no visible binding for global variable
‘jitters’
stergm.EGMME.SA : accel.brake: no visible binding for global variable
‘oh’
stergm.EGMME.SA: no visible binding for global variable ‘oh’
Found .Internal call in the following function:
‘ergm.update.formula’
with calls to .Internal functions
‘update.formula’

Packages should not call .Internal(): it is not part of the API, for
use only by R itself and subject to change without notice.
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd cross-references ... WARNING
Unknown package(s) ‘latentnet’ in Rd xrefs
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... OK
checking data for ASCII and uncompressed saves ... OK
checking R/sysdata.rda ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking compiled code ... OK
checking examples ... [23m/23m] OK
checking for unstated dependencies in tests ... OK
checking tests ... ERROR
Running the tests in ‘tests/dynamic_simtest_bipartite.R’ failed.
Last 13 lines of output:
*** caught segfault ***
address 8, cause 'memory not mapped'

Traceback:
1: .C("MCMCDyn_wrapper", as.integer(Clist.form$tails), as.integer(Clist.form$heads), time = if (is.null(Clist.form$time)) as.integer(0) else as.integer(Clist.form$time), lasttoggle = if (is.null(Clist.form$lasttoggle)) as.integer(NULL) else as.integer(Clist.form$lasttoggle), as.integer(Clist.form$nedges), as.integer(Clist.form$n), as.integer(Clist.form$dir), as.integer(Clist.form$bipartite), as.integer(Clist.form$nterms), as.character(Clist.form$fnamestring), as.character(Clist.form$snamestring), as.character(MHproposal.form$name), as.character(MHproposal.form$package), as.double(Clist.form$inputs), as.double(eta.form), as.integer(Clist.diss$nterms), as.character(Clist.diss$fnamestring), as.character(Clist.diss$snamestring), as.character(MHproposal.diss$name), as.character(MHproposal.diss$package), as.double(Clist.diss$inputs), as.double(eta.diss), if (!is.null(model.mon)) as.integer(Clist.mon$nterms) else as.integer(0), if (!is.null(model.mon)) as.character(Clist.mon$fnamestring), if (!is.null(model.mon)) as.character(Clist.mon$snamestring), if (!is.null(model.mon)) as.double(Clist.mon$inputs), as.integer(MHproposal.form$arguments$constraints$bd$attribs), as.integer(MHproposal.form$arguments$constraints$bd$maxout), as.integer(MHproposal.form$arguments$constraints$bd$maxin), as.integer(MHproposal.form$arguments$constraints$bd$minout), as.integer(MHproposal.form$arguments$constraints$bd$minin), as.integer(MHproposal.form$arguments$constraints$bd$condAllDegExact), as.integer(length(MHproposal.form$arguments$constraints$bd$attribs)), as.double(control$time.samplesize), as.integer(control$MCMC.burnin), as.double(control$time.burnin), as.double(control$time.interval), s.form = if (collect.form) double(Clist.form$nstats * (control$time.samplesize + 1)) else double(0), s.diss = if (collect.diss) double(Clist.diss$nstats * (control$time.samplesize + 1)) else double(0), s.mon = if (!is.null(model.mon)) double(Clist.mon$nstats * (control$time.samplesize + 1)) else double(0), as.integer(maxedges), newnwtails = integer(maxchanges), newnwheads = integer(maxchanges), as.integer(maxchanges), diffnwtime = integer(maxchanges), diffnwtails = integer(maxchanges), diffnwheads = integer(maxchanges), as.integer(verbose), status = integer(1), PACKAGE = "ergm")
2: stergm.getMCMCsample(nw, model.form, model.diss, model.mon, MHproposal.form, MHproposal.diss, eta.form, eta.diss, control, verbose)
3: FUN(0L[[1L]], ...)
4: lapply(X = X, FUN = FUN, ...)
5: sapply(integer(n), eval.parent(substitute(function(...) expr)), simplify = simplify)
6: replicate(nsim, { if (is.null(nw %n% "lasttoggle")) nw %n% "lasttoggle" <- rep(0, network.dyadcount(nw)) if (is.null(nw %n% "time")) nw %n% "time" <- 0 z <- stergm.getMCMCsample(nw, model.form, model.diss, model.mon, MHproposal.form, MHproposal.diss, eta.form, eta.diss, control, verbose) stats.form <- if (control$collect.form) mcmc(sweep(z$statsmatrix.form, 2, summary(formation), "+"), start = time.burnin + 1, thin = time.interval) stats.diss <- if (control$collect.diss) mcmc(sweep(z$statsmatrix.diss, 2, summary(dissolution), "+"), start = time.burnin + 1, thin = time.interval) stats <- if (!is.null(model.mon)) mcmc(sweep(z$statsmatrix.mon, 2, summary(monitor), "+"), start = time.burnin + 1, thin = time.interval) if (control$toggles) { library(networkDynamic) nwd <- as.networkDynamic(nw, toggles = z$changed, start = nw %n% "time" + 0, end = nw %n% "time" + time.slices) nwd <- delete.network.attribute(nwd, "time") nwd <- delete.network.attribute(nwd, "lasttoggle") attributes(nwd) <- c(attributes(nwd), list(formation = formation, dissolution = dissolution, stats.form = stats.form, stats.diss = stats.diss, stats = stats, coef.form = coef.form, coef.diss = coef.diss, start = nw %n% "time" + 0, end = nw %n% "time" + time.slices, toggles = z$changed)) nwd } else list(stats.form = stats.form, stats.diss = stats.diss, stats = stats)}, simplify = FALSE)
7: simulate.network(g1, formation = ~edges, dissolution = ~edges, coef.form = coef.form, coef.diss = coef.diss, time.slices = S, verbose = TRUE)
8: simulate(g1, formation = ~edges, dissolution = ~edges, coef.form = coef.form, coef.diss = coef.diss, time.slices = S, verbose = TRUE)
aborting ...