- using R version 2.15.0 Patched (2012-03-31 r58888)
- using platform: sparc-sun-solaris2.10 (32-bit)
- using session charset: UTF-8
- checking for file ‘cobs/DESCRIPTION’ ... OK
- this is package ‘cobs’ version ‘1.2-2’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for .dll and .exe files ... OK
- checking whether package ‘cobs’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
plot.cobs: warning in deparse(x$call, width.cut = 100): partial
argument match of 'width.cut' to 'width.cutoff'
plot.cobs: warning in formatC(x$lambda, dig = 3): partial argument
match of 'dig' to 'digits'
summary.cobs: warning in .print.part(object$coef, nMin = 7, nam =
"coef", digits = digits): partial argument match of 'nam' to 'namX'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable compilation flags in Makevars ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking examples ... [127s/127s] OK
- checking for unstated dependencies in tests ... OK
- checking tests ... [525s/525s] OK
Running ‘ex1.R’ [65s/65s]
Comparing ‘ex1.Rout’ to ‘ex1.Rout.save’ ...409c409,410
< [1,] 2.30776 16 18 250.3 7.5999 11
---
> [1,] 2.30776 16 18 250.300 7.59990 11
> [2,] 4.51708 16 18 258.955 1.78571 6
447,453c448,454
< 1 -18.0106902 -9.829675 6.86289 23.5554 31.7365
< 2 -15.9869427 -8.308682 7.35806 23.0248 30.7031
< 3 -14.7253903 -7.299595 7.85201 23.0036 30.4294
< 4 -14.0304377 -6.671152 8.34475 23.3607 30.7199
< 5 -13.6842238 -6.277147 8.83627 23.9497 31.3568
< 6 -13.4881973 -5.984332 9.32657 24.6375 32.1413
< 7 -13.2846859 -5.686895 9.81565 25.3182 32.9160
---
> 1 -18.0106904 -9.829675 6.86289 23.5554 31.7365
> 2 -15.9869429 -8.308682 7.35806 23.0248 30.7031
> 3 -14.7253905 -7.299596 7.85201 23.0036 30.4294
> 4 -14.0304378 -6.671153 8.34475 23.3607 30.7199
> 5 -13.6842240 -6.277147 8.83627 23.9497 31.3568
> 6 -13.4881974 -5.984332 9.32657 24.6375 32.1413
> 7 -13.2846860 -5.686895 9.81565 25.3182 32.9160
569,572c570,573
< [1,] 0.0107117 16 18 263.500 4.00000 18
< [2,] 0.3077451 12 18 263.500 4.00000 18
< [3,] 1.1790290 15 18 263.944 1.77778 16
< [4,] 2.3077627 16 18 264.750 1.00000 15
---
> [1,] 0.00279592 15 18 263.50 4 18
> [2,] 0.00547257 15 18 263.50 4 18
> [3,] 0.30774511 12 18 263.50 4 18
> [4,] 2.30776272 16 18 264.75 1 15
606c607
< $ ifl : int [1:25] 1 1 18 1 1 1 1 18 1 18 ...
---
> $ ifl : int [1:25] 18 18 1 1 1 1 1 18 1 1 ...
885,886c886,887
< Warning message:
< In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
---
> Warning messages:
> 1: In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
888a890,891
> 2: In cobs(x, y, "decrease", knots = ux, nknots = length(ux)) :
> Check 'ifl'
892a896,899
>
> **** ERROR in algorithm: ifl = 18
>
>
906,908d912
< Warning message:
< In cobs(x, y, "decrease", knots = ux, nknots = length(ux), degree = 1) :
< Check 'ifl'
912,915d915
<
< **** ERROR in algorithm: ifl = 18
<
<
919c919
< R^2 = 96.02% ; empirical tau (over all): 251/500 = 0.502 (target tau= 0.5)
---
> R^2 = 96.02% ; empirical tau (over all): 248/500 = 0.496 (target tau= 0.5)
1299c1299
< [21] -1.82479e+00 3.65509e-11
---
> [21] -1.82479e+00 3.65434e-11
Running ‘ex2-long.R’ [107s/107s]
Comparing ‘ex2-long.Rout’ to ‘ex2-long.Rout.save’ ...595c595
< $ icyc : int 47
---
> $ icyc : int 46
694c694
< 94 -0.2510614 0.07090315 0.1466976 0.222492 0.54446
---
> 94 -0.2510614 0.07090314 0.1466976 0.222492 0.54446
719c719
< [61] -0.0094285 432.6957267
---
> [61] -0.0094285 432.6957858
1477c1477
< [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84237
---
> [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84235
1488c1488
< [1] 0.81891
---
> [1] 0.81881
Running ‘ex3.R’
Comparing ‘ex3.Rout’ to ‘ex3.Rout.save’ ... OK
Running ‘multi-constr.R’ [28s/28s]
Comparing ‘multi-constr.Rout’ to ‘multi-constr.Rout.save’ ...257,258d256
< Warning message:
< In cobs(x, y, constraint = "increase", pointwise = con) : Check 'ifl'
Running ‘pt-ex.R’
Running ‘roof.R’ [25s/25s]
Comparing ‘roof.Rout’ to ‘roof.Rout.save’ ... OK
Running ‘small-ex.R’
Comparing ‘small-ex.Rout’ to ‘small-ex.Rout.save’ ... OK
Running ‘spline-ex.R’
Comparing ‘spline-ex.Rout’ to ‘spline-ex.Rout.save’ ... OK
Running ‘temp.R’ [15s/15s]
Comparing ‘temp.Rout’ to ‘temp.Rout.save’ ... OK
Running ‘wind.R’ [257s/257s]
Comparing ‘wind.Rout’ to ‘wind.Rout.save’ ...99c99
< R^2 = 8.22% ; empirical tau (over all): 3287/6574 = 0.5 (target tau= 0.5)
---
> R^2 = 8.22% ; empirical tau (over all): 3286/6574 = 0.4998479 (target tau= 0.5)
- checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/home/ripley/R/packages/tests32/cobs.Rcheck/00check.log’
for details.