- using R version 3.0.1 Patched (2013-05-18 r62762)
- using platform: sparc-sun-solaris2.10 (32-bit)
- using session charset: UTF-8
- checking for file ‘cobs/DESCRIPTION’ ... OK
- this is package ‘cobs’ version ‘1.2-2’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘cobs’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
File ‘cobs/R/scobs.R’:
.onLoad calls:
packageStartupMessage(sprintf("Package %s (%s) loaded. To cite, see citation(\"%s\")\n", pkg, utils::packageDescription(pkg)$Version, pkg))
See section ‘Good practice’ in '?.onAttach'.
plot.cobs: warning in deparse(x$call, width.cut = 100): partial
argument match of 'width.cut' to 'width.cutoff'
plot.cobs: warning in formatC(x$lambda, dig = 3): partial argument
match of 'dig' to 'digits'
summary.cobs: warning in .print.part(object$coef, nMin = 7, nam =
"coef", digits = digits): partial argument match of 'nam' to 'namX'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable compilation flags in Makevars ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... OK
- checking examples ... [120s/120s] OK
- checking for unstated dependencies in tests ... OK
- checking tests ... [501s/501s] OK
Running ‘ex1.R’ [62s/62s]
Comparing ‘ex1.Rout’ to ‘ex1.Rout.save’ ...448,456c448,456
< 1 -18.0106902 -9.829675 6.86289 23.5554 31.7365
< 2 -15.9869427 -8.308682 7.35806 23.0248 30.7031
< 3 -14.7253903 -7.299595 7.85201 23.0036 30.4294
< 4 -14.0304377 -6.671152 8.34475 23.3607 30.7199
< 5 -13.6842238 -6.277147 8.83627 23.9497 31.3568
< 6 -13.4881973 -5.984332 9.32657 24.6375 32.1413
< 7 -13.2846859 -5.686895 9.81565 25.3182 32.9160
< 8 -12.9604500 -5.308840 10.30352 25.9159 33.5675
< 9 -12.4418513 -4.800750 10.79017 26.3811 34.0222
---
> 1 -18.0106904 -9.829675 6.86289 23.5554 31.7365
> 2 -15.9869429 -8.308682 7.35806 23.0248 30.7031
> 3 -14.7253905 -7.299596 7.85201 23.0036 30.4294
> 4 -14.0304378 -6.671153 8.34475 23.3607 30.7199
> 5 -13.6842240 -6.277147 8.83627 23.9497 31.3568
> 6 -13.4881974 -5.984332 9.32657 24.6375 32.1413
> 7 -13.2846860 -5.686895 9.81565 25.3182 32.9160
> 8 -12.9604501 -5.308840 10.30352 25.9159 33.5675
> 9 -12.4418514 -4.800750 10.79017 26.3811 34.0222
570,572c570,573
< [1,] 0.00279592 15 18 263.5 4 18
< [2,] 0.00547257 15 18 263.5 4 18
< [3,] 0.01071169 16 18 263.5 4 18
---
> [1,] 0.00279592 15 18 263.50 4 18
> [2,] 0.00547257 15 18 263.50 4 18
> [3,] 0.30774511 12 18 263.50 4 18
> [4,] 2.30776272 16 18 264.75 1 15
606c607
< $ ifl : int [1:25] 18 18 18 1 1 1 1 1 1 1 ...
---
> $ ifl : int [1:25] 18 18 1 1 1 1 1 18 1 1 ...
918c919
< R^2 = 96.02% ; empirical tau (over all): 252/500 = 0.504 (target tau= 0.5)
---
> R^2 = 96.02% ; empirical tau (over all): 248/500 = 0.496 (target tau= 0.5)
1298c1299
< [21] -1.82479e+00 3.65440e-11
---
> [21] -1.82479e+00 3.65434e-11
Running ‘ex2-long.R’ [98s/98s]
Comparing ‘ex2-long.Rout’ to ‘ex2-long.Rout.save’ ...719c719
< [61] -0.0094285 432.6957896
---
> [61] -0.0094285 432.6957858
1477c1477
< [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84237
---
> [57] 0.40976 0.40976 0.40976 0.40976 0.38342 386.84235
1488c1488
< [1] 0.8189
---
> [1] 0.81881
Running ‘ex3.R’
Comparing ‘ex3.Rout’ to ‘ex3.Rout.save’ ... OK
Running ‘multi-constr.R’ [26s/26s]
Comparing ‘multi-constr.Rout’ to ‘multi-constr.Rout.save’ ...257,258d256
< Warning message:
< In cobs(x, y, constraint = "increase", pointwise = con) : Check 'ifl'
Running ‘pt-ex.R’
Running ‘roof.R’ [24s/24s]
Comparing ‘roof.Rout’ to ‘roof.Rout.save’ ... OK
Running ‘small-ex.R’
Comparing ‘small-ex.Rout’ to ‘small-ex.Rout.save’ ... OK
Running ‘spline-ex.R’
Comparing ‘spline-ex.Rout’ to ‘spline-ex.Rout.save’ ... OK
Running ‘temp.R’ [15s/15s]
Comparing ‘temp.Rout’ to ‘temp.Rout.save’ ... OK
Running ‘wind.R’ [246s/246s]
Comparing ‘wind.Rout’ to ‘wind.Rout.save’ ...99c99
< R^2 = 8.22% ; empirical tau (over all): 3287/6574 = 0.5 (target tau= 0.5)
---
> R^2 = 8.22% ; empirical tau (over all): 3286/6574 = 0.4998479 (target tau= 0.5)
- checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/home/ripley/R/packages/tests32/cobs.Rcheck/00check.log’
for details.