• using R version 3.0.1 Patched (2013-05-18 r62762)
• using platform: sparc-sun-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘analogue/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘analogue’ version ‘0.10-0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘analogue’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [143s/143s] OK
• checking differences from ‘analogue-Ex.Rout’ to ‘analogue-Ex.Rout.save’ ...
  2c2
  < This is vegan 2.0-7
  ---
  > This is vegan 2.0-5
  6c6
  < > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
  ---
  > > assign(".oldSearch", search(), pos = 'CheckExEnv')
  939c939
  < 24.838 24.668 25.240 25.705 26.011 26.743 24.352 25.476
  ---
  > 24.837 24.668 25.240 25.705 26.011 26.743 24.352 25.476
  982c982
  < V17.165 26.0 25.333 -0.66667 24.838 -1.16250 0.52397 1.2718 4.539
  ---
  > V17.165 26.0 25.333 -0.66667 24.837 -1.16250 0.52397 1.2718 4.539
  1031c1031
  < 24.838 24.668 25.240 25.705 26.011 26.743 24.352 25.476
  ---
  > 24.837 24.668 25.240 25.705 26.011 26.743 24.352 25.476
  4996c4996
  < -3.89845110 -0.95914237 -0.57577610 0.83646773 -1.12654866 1.85855684
  ---
  > -3.89845110 -0.95914236 -0.57577610 0.83646773 -1.12654865 1.85855684
  4998c4998
  < 4.93907447 -1.56332718 1.02901346 -2.01091600 0.72379238 -2.30397581
  ---
  > 4.93907447 -1.56332718 1.02901346 -2.01091601 0.72379237 -2.30397582
  5000c5000
  < -1.16893885 -1.90464620 0.99721686 -1.39764003 1.29346295 -0.29234573
  ---
  > -1.16893886 -1.90464621 0.99721685 -1.39764003 1.29346294 -0.29234573
  5002c5002
  < 2.13000056 -4.44031822 -0.92783840 0.99172654 -1.49152689 1.88724026
  ---
  > 2.13000055 -4.44031821 -0.92783839 0.99172654 -1.49152688 1.88724027
  5004c5004
  < 2.78850048 -0.63727536 0.33475037 -0.01275751 -1.65993109 -2.09930701
  ---
  > 2.78850049 -0.63727536 0.33475038 -0.01275751 -1.65993108 -2.09930701
  5006c5006
  < -0.97538682 2.31383514 1.87380535 2.64327583 0.01900071 0.13747169
  ---
  > -0.97538682 2.31383515 1.87380536 2.64327583 0.01900072 0.13747169
  5008c5008
  < -0.26612390 -2.21647192 2.40270758 0.25826513 -1.69856608 0.20738893
  ---
  > -0.26612390 -2.21647192 2.40270759 0.25826513 -1.69856608 0.20738893
  5014c5014
  < 1.53212230 0.96958483 0.44047759 -0.17038549 -0.21308146 -0.39014885
  ---
  > 1.53212229 0.96958483 0.44047759 -0.17038549 -0.21308146 -0.39014886
  5021c5021
  < 2.019e+00 9.173e-01 2.060e-14 -3.815e+00
  ---
  > 2.019e+00 9.173e-01 2.228e-14 -3.815e+00
  5979c5979
  < Iteration 1: d.sq: 4853.7911
  ---
  > Iteration 1: d.sq: 4853.7912
  7170c7170
  < -3.89845110 -0.95914237 -0.57577610 0.83646773 -1.12654866 1.85855684
  ---
  > -3.89845110 -0.95914236 -0.57577610 0.83646773 -1.12654865 1.85855684
  7172c7172
  < 4.93907447 -1.56332718 1.02901346 -2.01091600 0.72379238 -2.30397581
  ---
  > 4.93907447 -1.56332718 1.02901346 -2.01091601 0.72379237 -2.30397582
  7174c7174
  < -1.16893885 -1.90464620 0.99721686 -1.39764003 1.29346295 -0.29234573
  ---
  > -1.16893886 -1.90464621 0.99721685 -1.39764003 1.29346294 -0.29234573
  7176c7176
  < 2.13000056 -4.44031822 -0.92783840 0.99172654 -1.49152689 1.88724026
  ---
  > 2.13000055 -4.44031821 -0.92783839 0.99172654 -1.49152688 1.88724027
  7178c7178
  < 2.78850048 -0.63727536 0.33475037 -0.01275751 -1.65993109 -2.09930701
  ---
  > 2.78850049 -0.63727536 0.33475038 -0.01275751 -1.65993108 -2.09930701
  7180c7180
  < -0.97538682 2.31383514 1.87380535 2.64327583 0.01900071 0.13747169
  ---
  > -0.97538682 2.31383515 1.87380536 2.64327583 0.01900072 0.13747169
  7182c7182
  < -0.26612390 -2.21647192 2.40270758 0.25826513 -1.69856608 0.20738893
  ---
  > -0.26612390 -2.21647192 2.40270759 0.25826513 -1.69856608 0.20738893
  7188c7188
  < 1.53212230 0.96958483 0.44047759 -0.17038549 -0.21308146 -0.39014885
  ---
  > 1.53212229 0.96958483 0.44047759 -0.17038549 -0.21308146 -0.39014886
  OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [140s/140s] OK
• checking re-building of vignette PDFs ... [188s/187s] OK
• checking PDF version of manual ... OK