- using R version 2.15.0 Patched (2012-03-31 r58888)
- using platform: sparc-sun-solaris2.10 (32-bit)
- using session charset: UTF-8
- checking for file ‘alphahull/DESCRIPTION’ ... OK
- this is package ‘alphahull’ version ‘0.2-1’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for .dll and .exe files ... OK
- checking whether package ‘alphahull’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
ahull: warning in matrix(ashape.obj$x[addp, 1:2], nc = 2, byr = FALSE):
partial argument match of 'nc' to 'ncol'
ahull: warning in matrix(ashape.obj$x[addp, 1:2], nc = 2, byr = FALSE):
partial argument match of 'byr' to 'byrow'
ashape: warning in matrix(t(aux[in.ashape, ]), byrow = TRUE, nc = 12):
partial argument match of 'nc' to 'ncol'
complement: warning in matrix(mesh[case1.1, ], nr = n.case1.1): partial
argument match of 'nr' to 'nrow'
complement: warning in matrix(mesh[case1.2, ], nr = n.case1.2): partial
argument match of 'nr' to 'nrow'
complement: warning in matrix(matrix(mesh[case1.3, ], nr =
n.case1.3)[case1.3.1, ], nr = n.case1.3.1): partial argument match of
'nr' to 'nrow'
complement: warning in matrix(mesh[case1.3, ], nr = n.case1.3): partial
argument match of 'nr' to 'nrow'
complement: warning in matrix(mesh[case2.1, ], nr = n.case2.1): partial
argument match of 'nr' to 'nrow'
complement: warning in matrix(mesh[case2.2, ], nr = n.case2.2): partial
argument match of 'nr' to 'nrow'
complement: warning in matrix(matrix(mesh[case2.3, ], nr =
n.case2.3)[case2.3.1, ], nr = n.case2.3.1): partial argument match of
'nr' to 'nrow'
complement: warning in matrix(mesh[case2.3, ], nr = n.case2.3): partial
argument match of 'nr' to 'nrow'
complement: warning in matrix(nr = n.case.h, nc = 19): partial argument
match of 'nr' to 'nrow'
complement: warning in matrix(nr = n.case.h, nc = 19): partial argument
match of 'nc' to 'ncol'
delvor: warning in matrix(tri.info[, c("arc1", "node2", "node3")], nc =
3, nr = 1): partial argument match of 'nr' to 'nrow'
delvor: warning in matrix(tri.info[, c("arc1", "node2", "node3")], nc =
3, nr = 1): partial argument match of 'nc' to 'ncol'
delvor: warning in matrix(tri.info[, c("arc2", "node1", "node3")], nc =
3, nr = 1): partial argument match of 'nr' to 'nrow'
delvor: warning in matrix(tri.info[, c("arc2", "node1", "node3")], nc =
3, nr = 1): partial argument match of 'nc' to 'ncol'
delvor: warning in matrix(tri.info[, c("arc3", "node1", "node2")], nc =
3, nr = 1): partial argument match of 'nr' to 'nrow'
delvor: warning in matrix(tri.info[, c("arc3", "node1", "node2")], nc =
3, nr = 1): partial argument match of 'nc' to 'ncol'
koch: warning in matrix(nr = npoints, nc = 2): partial argument match
of 'nr' to 'nrow'
koch: warning in matrix(nr = npoints, nc = 2): partial argument match
of 'nc' to 'ncol'
koch: warning in matrix(c(cos(-pi/3), sin(-pi/3)), nr = length(index1),
nc = 2, byrow = TRUE): partial argument match of 'nr' to 'nrow'
koch: warning in matrix(c(cos(-pi/3), sin(-pi/3)), nr = length(index1),
nc = 2, byrow = TRUE): partial argument match of 'nc' to 'ncol'
koch: warning in matrix(c(-sin(-pi/3), cos(-pi/3)), nr =
length(index1), nc = 2, byrow = TRUE): partial argument match of 'nr'
to 'nrow'
koch: warning in matrix(c(-sin(-pi/3), cos(-pi/3)), nr =
length(index1), nc = 2, byrow = TRUE): partial argument match of 'nc'
to 'ncol'
rkoch: warning in matrix(nr = n, nc = 2): partial argument match of
'nr' to 'nrow'
rkoch: warning in matrix(nr = n, nc = 2): partial argument match of
'nc' to 'ncol'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... NOTE
File ‘/home/ripley/R/Lib32/alphahull/libs/alphahull.so’:
Found ‘__f90_esfw’, possibly from ‘print’ (Fortran), ‘write’
(Fortran)
Object: ‘tripack.o’
Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
- checking installed files from ‘inst/doc’ ... NOTE
The following files are already in R: ‘jss.bst’, ‘jss.cls’
Please remove them from your package.
- checking examples ... [64s/99s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [43s/43s] OK
- checking re-building of vignette PDFs ... [72s/71s] OK
- checking PDF version of manual ... OK
NOTE: There were 3 notes.
See
‘/home/ripley/R/packages/tests32/alphahull.Rcheck/00check.log’
for details.