• using R version 3.0.1 Patched (2013-05-18 r62762)
  • using platform: sparc-sun-solaris2.10 (32-bit)
  • using session charset: UTF-8
  • checking for file ‘Rmpfr/DESCRIPTION’ ... OK
  • checking extension type ... Package
  • this is package ‘Rmpfr’ version ‘0.5-1’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘Rmpfr’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking loading without being on the library search path ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable compilation flags in Makevars ... OK
  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking compiled code ... NOTE
    File ‘/home/ripley/R/Lib32/Rmpfr/libs/Rmpfr.so’:
    Found non-API call to R: ‘R_Outputfile’

    Compiled code should not call non-API entry points in R.

    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
  • checking installed files from ‘inst/doc’ ... OK
  • checking examples ... [249s/249s] OK
  • checking for unstated dependencies in tests ... OK
  • checking tests ... [377s/377s] OK
    Running ‘arith-ex.R’ [14s/14s]
    Running ‘binomial-etc.R’ [11s/11s]
    Running ‘bit-repr.R’ [11s/11s]
    Comparing ‘bit-repr.Rout’ to ‘bit-repr.Rout.save’ ...7c7
    < The following object is masked from 'package:base':
    ---
    > The following object(s) are masked from 'package:base':
    11c11
    < Loading C code of R package 'Rmpfr': GMP using 32 bits per limb
    ---
    > Loading C code of R package 'Rmpfr': GMP using 64 bits per limb
    15c15
    < The following object is masked from 'package:stats':
    ---
    > The following object(s) are masked from 'package:stats':
    19c19
    < The following object is masked from 'package:base':
    ---
    > The following object(s) are masked from 'package:base':
    Running ‘create.R’ [12s/12s]
    Running ‘matrix-ex.R’ [30s/30s]
    Running ‘special-fun-ex.R’ [296s/296s]
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... [105s/105s] OK
  • checking re-building of vignette PDFs ... NOTE
    Error in re-building vignettes:
    ...
    The following object is masked from ‘package:sfsmisc’:

    factorize

    The following object is masked from ‘package:base’:

    %*%, apply, crossprod, matrix, tcrossprod


    Attaching package: ‘Rmpfr’

    The following object is masked from ‘package:stats’:

    pnorm, print.integrate

    The following object is masked from ‘package:base’:

    cbind, pmax, pmin, rbind


    Error: processing vignette 'Rmpfr-pkg.Rnw' failed with diagnostics:
    chunk 26 (label = Li2-curve)
    Error in int_abline(a = a, b = b, h = h, v = v, untf = untf, ...) :
    plot.new has not been called yet
    Execution halted
  • checking PDF version of manual ... OK
    NOTE: There were 2 notes.
    See
    ‘/home/ripley/R/packages/tests32/Rmpfr.Rcheck/00check.log’
    for details.