• using R version 3.0.0 Patched (2013-05-02 r62711)
  • using platform: sparc-sun-solaris2.10 (32-bit)
  • using session charset: UTF-8
  • checking for file ‘RItools/DESCRIPTION’ ... OK
  • this is package ‘RItools’ version ‘0.1-11’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for .dll and .exe files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘RItools’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking loading without being on the library search path ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    makePval: warning in pnorm(abs(zs), lower = FALSE): partial argument
    match of 'lower' to 'lower.tail'
    naImpute: warning in terms.formula(if (length(FMLA) > 2) FMLA[-2] else
    FMLA, dat = DATA, keep.order = TRUE): partial argument match of 'dat'
    to 'data'
    naImpute: warning in terms.formula(TFMLA, dat = dat, keep.order =
    TRUE): partial argument match of 'dat' to 'data'
    naImpute: warning in terms.formula(FMLA, dat = DATA, keep.order =
    TRUE): partial argument match of 'dat' to 'data'
    xBalance: warning in terms.formula(fmla, dat = data, keep.order =
    TRUE): partial argument match of 'dat' to 'data'
    xBalance: warning in pchisq(RES[[nn]]$chisq["chisquare"], df =
    RES[[nn]]$chisq["df"], lower = FALSE): partial argument match of
    'lower' to 'lower.tail'
    xBalanceEngine: warning in pnorm(abs(ssn/sqrt(ssvar)), lower = FALSE):
    partial argument match of 'lower' to 'lower.tail'
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking installed files from ‘inst/doc’ ... NOTE
    The following files should probably not be installed:
    ‘asa.bst’

    Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
    or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
  • checking examples ... [10s/10s] OK
  • checking for unstated dependencies in tests ... OK
  • checking tests ... [22s/22s] OK
    Running ‘naImputeTests.R’
    Comparing ‘naImputeTests.Rout’ to ‘naImputeTests.Rout.save’ ...2a3,4
    > [Previously saved workspace restored]
    >
    4c6
    < Package SparseM (0.99) loaded.
    ---
    > Package SparseM (0.85) loaded.
    Running ‘xBalanceTests.R’
    Comparing ‘xBalanceTests.Rout’ to ‘xBalanceTests.Rout.save’ ...4c4
    < Package SparseM (0.99) loaded.
    ---
    > Package SparseM (0.85) loaded.
    292,293c292,293
    < % latex table generated in R 3.0.0 by xtable 1.7-1 package
    < % Sat May 4 14:23:47 2013
    ---
    > % latex table generated in R 2.11.1 by xtable 1.5-6 package
    > % Thu Aug 5 21:49:38 2010
    295c295
    < \centering
    ---
    > \begin{center}
    300c300
    < date & 69 & 68 & -0.1 & -0.1 & -0.3 & & 68 & 69 & 0.1 & 0.1 & 0.3 & \\
    ---
    > date & 69 & 69 & -0.1 & -0.1 & -0.3 & & 68 & 69 & 0.1 & 0.1 & 0.3 & \\
    311a312
    > \end{center}
    Running ‘xBalanceTests2.R’
    Comparing ‘xBalanceTests2.Rout’ to ‘xBalanceTests2.Rout.save’ ...6,7c6
    < > ###binary treatment. The idea here to show that the math in that
    < > ###article is equivalent to the output from xBalance.
    ---
    > > ###binary treatment.
    10c9
    < Package SparseM (0.99) loaded.
    ---
    > Package SparseM (0.85) loaded.
    124a124
    >
  • checking PDF version of manual ... OK
    NOTE: There were 2 notes.
    See
    ‘/home/ripley/R/packages/tests32/RItools.Rcheck/00check.log’
    for details.