• using R version 2.15.0 Patched (2012-04-03 r58910)
• using platform: sparc-sun-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘NestedCohort/DESCRIPTION’ ... OK
• this is package ‘NestedCohort’ version ‘1.1-2’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... NOTE
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
  CRAN requires a NAMESPACE file for all submissions.
• checking for .dll and .exe files ... OK
• checking whether package ‘NestedCohort’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... NOTE
  Found the following CITATION file(s) in a non-standard place:
  CITATION
  Most likely ‘inst/CITATION’ should be used instead.
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  nested.coxph: no visible binding for global variable ‘p.i.h.a.t.’
  nested.km: no visible binding for global variable ‘p.i.h.a.t.’
  nested.stdsurv: no visible binding for global variable ‘p.i.h.a.t.’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... NOTE
  The following files look like leftovers/mistakes:
  ‘NestedCohort.bbl’
  Please remove them from your package.
  The following files should probably not be installed:
  ‘S.sty’
  The following directories should probably not be installed:
  ‘auto’
  
  Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
  or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
• checking examples ... [11s/11s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [11s/11s] OK
• checking re-building of vignette PDFs ... [24s/23s] OK
• checking PDF version of manual ... OK
  NOTE: There were 4 notes.
  See
  ‘/home/ripley/R/packages/tests32/NestedCohort.Rcheck/00check.log’
  for details.