- using R version 2.15.0 Patched (2012-03-31 r58888)
- using platform: sparc-sun-solaris2.10 (32-bit)
- using session charset: UTF-8
- checking for file ‘IgorR/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘IgorR’ version ‘0.5’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for .dll and .exe files ... OK
- checking whether package ‘IgorR’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
.ReadUserStr: warning in .readCharsWithEnc(con, strLen, enc =
ifelse(IgorPlatform == "windows", "WINDOWS-1252", "macintosh")):
partial argument match of 'enc' to 'encoding'
ReadAllNclampLogTables: warning in dir(logfiledir, full = T): partial
argument match of 'full' to 'full.names'
ReadAllNclampLogTables: warning in assign("logfiles", list(), env =
.GlobalEnv): partial argument match of 'env' to 'envir'
SummariseSweepFile: warning in grep("^Chan[A-Z]$", listnames, val = T):
partial argument match of 'val' to 'value'
UpdateSweepDataFrame: warning in dir(folder, patt = "_[0-9]+\\.pxp$",
full = T): partial argument match of 'patt' to 'pattern'
UpdateSweepDataFrame: warning in dir(folder, patt = "_[0-9]+\\.pxp$",
full = T): partial argument match of 'full' to 'full.names'
read.pxp: warning in match.arg(IgorPlatform, choice = c("windows",
"macintosh")): partial argument match of 'choice' to 'choices'
ReadAllNclampLogTables: no visible binding for '<<-' assignment to
‘logfiles’
ReadAllNclampLogTables: no visible binding for global variable
‘logfiles’
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... ERROR
Running examples in ‘IgorR-Ex.R’ failed
The error most likely occurred in:
> ### Name: SummariseSweepFile
> ### Title: Extract summary information from an Nclamp/Igor Sweep File e.g.
> ### for import into Physiology database
> ### Aliases: SummariseSweepFile
>
> ### ** Examples
>
> l=SummariseSweepFile(system.file("igor","WedJul407c2_001.pxp",package="IgorR"))
Error in iconv(s, from = encoding, to = targetenc) :
unsupported conversion from 'macintosh' to 'utf8'
Calls: SummariseSweepFile ... read.pxp -> .ReadUserStr -> .readCharsWithEnc -> iconv
Execution halted