• using R version 2.15.0 Patched (2012-03-31 r58888)
  • using platform: sparc-sun-solaris2.10 (32-bit)
  • using session charset: UTF-8
  • checking for file ‘IgorR/DESCRIPTION’ ... OK
  • checking extension type ... Package
  • this is package ‘IgorR’ version ‘0.5’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for .dll and .exe files ... OK
  • checking whether package ‘IgorR’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    .ReadUserStr: warning in .readCharsWithEnc(con, strLen, enc =
    ifelse(IgorPlatform == "windows", "WINDOWS-1252", "macintosh")):
    partial argument match of 'enc' to 'encoding'
    ReadAllNclampLogTables: warning in dir(logfiledir, full = T): partial
    argument match of 'full' to 'full.names'
    ReadAllNclampLogTables: warning in assign("logfiles", list(), env =
    .GlobalEnv): partial argument match of 'env' to 'envir'
    SummariseSweepFile: warning in grep("^Chan[A-Z]$", listnames, val = T):
    partial argument match of 'val' to 'value'
    UpdateSweepDataFrame: warning in dir(folder, patt = "_[0-9]+\\.pxp$",
    full = T): partial argument match of 'patt' to 'pattern'
    UpdateSweepDataFrame: warning in dir(folder, patt = "_[0-9]+\\.pxp$",
    full = T): partial argument match of 'full' to 'full.names'
    read.pxp: warning in match.arg(IgorPlatform, choice = c("windows",
    "macintosh")): partial argument match of 'choice' to 'choices'
    ReadAllNclampLogTables: no visible binding for '<<-' assignment to
    ‘logfiles’
    ReadAllNclampLogTables: no visible binding for global variable
    ‘logfiles’
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking examples ... ERROR
    Running examples in ‘IgorR-Ex.R’ failed
    The error most likely occurred in:

    > ### Name: SummariseSweepFile
    > ### Title: Extract summary information from an Nclamp/Igor Sweep File e.g.
    > ### for import into Physiology database
    > ### Aliases: SummariseSweepFile
    >
    > ### ** Examples
    >
    > l=SummariseSweepFile(system.file("igor","WedJul407c2_001.pxp",package="IgorR"))
    Error in iconv(s, from = encoding, to = targetenc) :
    unsupported conversion from 'macintosh' to 'utf8'
    Calls: SummariseSweepFile ... read.pxp -> .ReadUserStr -> .readCharsWithEnc -> iconv
    Execution halted