• using R version 3.0.1 Patched (2013-05-18 r62762)
• using platform: sparc-sun-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘FTICRMS/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘FTICRMS’ version ‘0.8’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘FTICRMS’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  .alignment: warning in lm(Y ~ X, dat = fr): partial argument match of
  'dat' to 'data'
  .alignment: warning in lm(as.formula(form), dat = fr): partial argument
  match of 'dat' to 'data'
  display.tests: no visible binding for global variable ‘parameter.list’
  display.tests: no visible binding for global variable ‘sigs’
  display.tests: no visible binding for global variable ‘clust.mat’
  display.tests : <anonymous>: no visible binding for global variable
  ‘clust.mat’
  display.tests : <anonymous>: no visible binding for global variable
  ‘parameter.list’
  run.analysis: no visible binding for global variable ‘centers’
  run.cluster.matrix: no visible binding for global variable ‘amps’
  run.cluster.matrix: no visible binding for global variable
  ‘clust.constant’
  run.cluster.matrix: no visible binding for global variable ‘spect.base’
  run.lrg.peaks: no visible binding for global variable ‘spect.base’
• checking Rd files ... NOTE
  prepare_Rd: baseline.Rd:123: Dropping empty section \examples
  prepare_Rd: display.tests.Rd:43: Dropping empty section \references
  prepare_Rd: display.tests.Rd:57: Dropping empty section \examples
  prepare_Rd: extract.pars.Rd:114: Dropping empty section \examples
  prepare_Rd: locate.peaks.Rd:72: Dropping empty section \examples
  prepare_Rd: make.par.file.Rd:117: Dropping empty section \examples
  prepare_Rd: run.all.Rd:76: Dropping empty section \examples
  prepare_Rd: run.analysis.Rd:153: Dropping empty section \examples
  prepare_Rd: run.baselines.Rd:91: Dropping empty section \examples
  prepare_Rd: run.cluster.matrix.Rd:171: Dropping empty section \examples
  prepare_Rd: run.lrg.peaks.Rd:95: Dropping empty section \examples
  prepare_Rd: run.peaks.Rd:99: Dropping empty section \examples
  prepare_Rd: run.strong.peaks.Rd:115: Dropping empty section \examples
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... NONE
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/home/ripley/R/packages/tests32/FTICRMS.Rcheck/00check.log’
  for details.