• using R version 3.0.1 Patched (2013-05-18 r62762)
• using platform: sparc-sun-solaris2.10 (32-bit)
• using session charset: UTF-8
• checking for file ‘DRI/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘DRI’ version ‘1.1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘DRI’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  dri.heatmap: warning in rgb(corr.rgb[1], corr.rgb[2], corr.rgb[3], max
  = 255): partial argument match of 'max' to 'maxColorValue'
  dri.heatmap: warning in rgb(0, 4:1, 0, max = 4): partial argument match
  of 'max' to 'maxColorValue'
  dri.heatmap: warning in rgb(0, 0, 0, max = 255): partial argument match
  of 'max' to 'maxColorValue'
  dri.heatmap: warning in rgb(1:4, 0, 0, max = 4): partial argument match
  of 'max' to 'maxColorValue'
  dri.heatmap: warning in rgb(Blue2White.rgb[, 1], Blue2White.rgb[, 2],
  Blue2White.rgb[, 3], max = 255): partial argument match of 'max' to
  'maxColorValue'
  dri.heatmap: warning in rgb(White2Red.rgb[, 1], White2Red.rgb[, 2],
  White2Red.rgb[, 3], max = 255): partial argument match of 'max' to
  'maxColorValue'
  dri.heatmap: warning in rgb(255, 255, 255, max = 255): partial argument
  match of 'max' to 'maxColorValue'
  dri.heatmap: warning in rgb(0, 0, 4:1, max = 4): partial argument match
  of 'max' to 'maxColorValue'
  dri.heatmap: warning in rgb(1:4, 1:4, 0, max = 4): partial argument
  match of 'max' to 'maxColorValue'
  heatmap.plus: warning in rgb(col.rgb[i, 1], col.rgb[i, 2], col.rgb[i,
  3], max = 255): partial argument match of 'max' to 'maxColorValue'
• checking Rd files ... NOTE
  prepare_Rd: drcorrelate.Rd:72: Dropping empty section \keyword
  prepare_Rd: drcorrelate.Rd:73: Dropping empty section \keyword
  prepare_Rd: drcorrelate.Rd:41-42: Dropping empty section \note
  prepare_Rd: drcorrelate.null.Rd:62: Dropping empty section \keyword
  prepare_Rd: drcorrelate.null.Rd:63: Dropping empty section \keyword
  prepare_Rd: drcorrelate.null.Rd:21-22: Dropping empty section \details
  prepare_Rd: drcorrelate.null.Rd:31-32: Dropping empty section \note
  prepare_Rd: dri.correlation.plot.Rd:67: Dropping empty section \keyword
  prepare_Rd: dri.correlation.plot.Rd:68: Dropping empty section \keyword
  prepare_Rd: dri.correlation.plot.Rd:22-23: Dropping empty section \details
  prepare_Rd: dri.correlation.plot.Rd:33-34: Dropping empty section \note
  prepare_Rd: dri.fdrCutoff.Rd:76: Dropping empty section \keyword
  prepare_Rd: dri.fdrCutoff.Rd:77: Dropping empty section \keyword
  prepare_Rd: dri.fdrCutoff.Rd:31-32: Dropping empty section \note
  prepare_Rd: dri.heatmap.Rd:73: Dropping empty section \keyword
  prepare_Rd: dri.heatmap.Rd:74: Dropping empty section \keyword
  prepare_Rd: dri.heatmap.Rd:26-27: Dropping empty section \details
  prepare_Rd: dri.heatmap.Rd:28-29: Dropping empty section \value
  prepare_Rd: dri.heatmap.Rd:35-36: Dropping empty section \note
  prepare_Rd: dri.impute.Rd:51: Dropping empty section \keyword
  prepare_Rd: dri.impute.Rd:52: Dropping empty section \keyword
  prepare_Rd: dri.impute.Rd:33-34: Dropping empty section \note
  prepare_Rd: dri.merge.CNbyRNA.Rd:58: Dropping empty section \keyword
  prepare_Rd: dri.merge.CNbyRNA.Rd:59: Dropping empty section \keyword
  prepare_Rd: dri.merge.CNbyRNA.Rd:40-41: Dropping empty section \note
  prepare_Rd: dri.sig_genes.Rd:67: Dropping empty section \keyword
  prepare_Rd: dri.sig_genes.Rd:68: Dropping empty section \keyword
  prepare_Rd: dri.sig_genes.Rd:25-26: Dropping empty section \details
  prepare_Rd: dri.sig_genes.Rd:35-36: Dropping empty section \note
  prepare_Rd: dri.smooth.cghdata.Rd:47: Dropping empty section \keyword
  prepare_Rd: dri.smooth.cghdata.Rd:48: Dropping empty section \keyword
  prepare_Rd: dri.smooth.cghdata.Rd:31-32: Dropping empty section \note
  prepare_Rd: drsam.Rd:71: Dropping empty section \keyword
  prepare_Rd: drsam.Rd:72: Dropping empty section \keyword
  prepare_Rd: drsam.Rd:38-39: Dropping empty section \note
  prepare_Rd: drsam.null.Rd:63: Dropping empty section \keyword
  prepare_Rd: drsam.null.Rd:64: Dropping empty section \keyword
  prepare_Rd: drsam.null.Rd:20-21: Dropping empty section \details
  prepare_Rd: drsam.null.Rd:30-31: Dropping empty section \note
  prepare_Rd: mySampleData.Rd:19-20: Dropping empty section \details
  prepare_Rd: runFusedLasso.Rd:57: Dropping empty section \keyword
  prepare_Rd: runFusedLasso.Rd:58: Dropping empty section \keyword
  prepare_Rd: runFusedLasso.Rd:39-40: Dropping empty section \note
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [16s/16s] OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/home/ripley/R/packages/tests32/DRI.Rcheck/00check.log’
  for details.