• using R version 2.10.0 beta (2009-10-12 r50045)
  • using session charset: ASCII
  • checking for file 'knnTree/DESCRIPTION' ... OK
  • this is package 'knnTree' version '1.2.4'
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking for executable files ... OK
  • checking whether package 'knnTree' can be installed ... WARNING
    Found the following significant warnings:
    Warning: bad markup (extra space?) at knn.var.Rd:17:13
    Warning: bad markup (extra space?) at knn.var.Rd:19:12
    Warning: bad markup (extra space?) at knn.var.Rd:21:13
    Warning: bad markup (extra space?) at knn.var.Rd:22:23
    Warning: bad markup (extra space?) at knn.var.Rd:26:24
    Warning: bad markup (extra space?) at knn.var.Rd:29:15
    Warning: bad markup (extra space?) at knn.var.Rd:32:16
    Warning: bad markup (extra space?) at knn.var.Rd:36:17
    Warning: bad markup (extra space?) at knn.var.Rd:38:17
    Warning: bad markup (extra space?) at knn.var.Rd:40:15
    Warning: bad markup (extra space?) at knn.var.Rd:45:15
    Warning: bad markup (extra space?) at knnTree.Rd:13:15
    Warning: bad markup (extra space?) at knnTree.Rd:14:19
    Warning: bad markup (extra space?) at knnTree.Rd:15:9
    Warning: bad markup (extra space?) at knnTree.Rd:16:13
    Warning: bad markup (extra space?) at knnTree.Rd:17:12
    Warning: bad markup (extra space?) at knnTree.Rd:19:16
    Warning: bad markup (extra space?) at knnTree.Rd:24:21
    Warning: bad markup (extra space?) at knnTree.Rd:25:15
    Warning: bad markup (extra space?) at knnTree.Rd:28:22
    Warning: bad markup (extra space?) at knnTree.Rd:30:14
    Warning: bad markup (extra space?) at knnTree.Rd:31:16
    Warning: bad markup (extra space?) at knnTree.Rd:35:17
    Warning: bad markup (extra space?) at knnTree.Rd:37:15
    Warning: bad markup (extra space?) at knnTree.Rd:39:18
    Warning: bad markup (extra space?) at knnTree.Rd:40:15
    Warning: bad markup (extra space?) at knnTree.Rd:44:13
    Warning: bad markup (extra space?) at knnTree.Rd:45:13
    Warning: bad markup (extra space?) at knnTree.Rd:47:15
    Warning: bad markup (extra space?) at knnTree.Rd:49:19
    Warning: bad markup (extra space?) at predict.knn.Rd:10:14
    Warning: bad markup (extra space?) at predict.knn.Rd:11:12
    Warning: bad markup (extra space?) at predict.knn.Rd:13:13
    Warning: bad markup (extra space?) at predict.knn.Rd:15:23
    Warning: bad markup (extra space?) at predict.knn.Rd:17:30
    Warning: bad markup (extra space?) at predict.knn.Rd:19:15
    Warning: bad markup (extra space?) at predict.knn.Rd:24:11
    Warning: bad markup (extra space?) at predict.knnTree.Rd:9:14
    Warning: bad markup (extra space?) at predict.knnTree.Rd:10:12
    Warning: bad markup (extra space?) at predict.knnTree.Rd:12:13
    Warning: bad markup (extra space?) at predict.knnTree.Rd:14:15
    Warning: bad markup (extra space?) at predict.knnTree.Rd:15:11
    Warning: bad markup (extra space?) at print.knn.Rd:9:9
    Warning: bad markup (extra space?) at print.knn.Rd:10:11
    Warning: bad markup (extra space?) at print.knnTree.Rd:9:9
    Warning: bad markup (extra space?) at print.knnTree.Rd:10:11
    See http://www.r-project.org/nosvn/R.check/r-patched-macosx-ix86/knnTree-00install.html for details.
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    knnTree: no visible binding for global variable 'prune.misclass'
    knnTree: possible error in assign("verbose", verbose, frame = 1):
    unused argument(s) (frame = 1)
    knnTree: possible error in assign("fname", fname, frame = 1): unused
    argument(s) (frame = 1)
    knnTree: possible error in assign("data", data, frame = 1): unused
    argument(s) (frame = 1)
    knnTree: no visible global function definition for 'tree'
    knnTree: no visible global function definition for 'cv.tree'
    knnTree: possible error in assign("chunk", chunk, frame = 1): unused
    argument(s) (frame = 1)
    knnTree: possible error in assign("results", results, frame = 1):
    unused argument(s) (frame = 1)
    knnTree: no visible global function definition for 'data.dump'
  • checking Rd files ... WARNING
    prepare_Rd: bad markup (extra space?) at knn.var.Rd:17:13
    prepare_Rd: bad markup (extra space?) at knn.var.Rd:19:12
    prepare_Rd: bad markup (extra space?) at knn.var.Rd:21:13
    prepare_Rd: bad markup (extra space?) at knn.var.Rd:22:23
    prepare_Rd: bad markup (extra space?) at knn.var.Rd:26:24
    prepare_Rd: bad markup (extra space?) at knn.var.Rd:29:15
    prepare_Rd: bad markup (extra space?) at knn.var.Rd:32:16
    prepare_Rd: bad markup (extra space?) at knn.var.Rd:36:17
    prepare_Rd: bad markup (extra space?) at knn.var.Rd:38:17
    prepare_Rd: bad markup (extra space?) at knn.var.Rd:40:15
    prepare_Rd: bad markup (extra space?) at knn.var.Rd:45:15
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:13:15
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:14:19
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:15:9
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:16:13
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:17:12
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:19:16
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:24:21
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:25:15
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:28:22
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:30:14
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:31:16
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:35:17
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:37:15
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:39:18
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:40:15
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:44:13
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:45:13
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:47:15
    prepare_Rd: bad markup (extra space?) at knnTree.Rd:49:19
    prepare_Rd: bad markup (extra space?) at predict.knn.Rd:10:14
    prepare_Rd: bad markup (extra space?) at predict.knn.Rd:11:12
    prepare_Rd: bad markup (extra space?) at predict.knn.Rd:13:13
    prepare_Rd: bad markup (extra space?) at predict.knn.Rd:15:23
    prepare_Rd: bad markup (extra space?) at predict.knn.Rd:17:30
    prepare_Rd: bad markup (extra space?) at predict.knn.Rd:19:15
    prepare_Rd: bad markup (extra space?) at predict.knn.Rd:24:11
    prepare_Rd: bad markup (extra space?) at predict.knnTree.Rd:9:14
    prepare_Rd: bad markup (extra space?) at predict.knnTree.Rd:10:12
    prepare_Rd: bad markup (extra space?) at predict.knnTree.Rd:12:13
    prepare_Rd: bad markup (extra space?) at predict.knnTree.Rd:14:15
    prepare_Rd: bad markup (extra space?) at predict.knnTree.Rd:15:11
    prepare_Rd: bad markup (extra space?) at print.knn.Rd:9:9
    prepare_Rd: bad markup (extra space?) at print.knn.Rd:10:11
    prepare_Rd: bad markup (extra space?) at print.knnTree.Rd:9:9
    prepare_Rd: bad markup (extra space?) at print.knnTree.Rd:10:11
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... NOTE
    S3 methods shown with full name in documentation object 'predict.knn':
    predict.knn

    S3 methods shown with full name in documentation object 'predict.knnTree':
    predict.knnTree

    S3 methods shown with full name in documentation object 'print.knn':
    print.knn

    S3 methods shown with full name in documentation object 'print.knnTree':
    print.knnTree

    The \usage entries for S3 methods should use the \method markup and not
    their full name.
    See the chapter 'Writing R documentation files' in manual 'Writing R
    Extensions'.
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable compilation flags in Makevars ... OK
  • checking for portable use of $BLAS_LIBS ... OK
  • checking examples ... OK
  • checking PDF version of manual ... OK
  • elapsed time (check, wall clock): 0:20