• using R version 2.14.1 Patched (2012-02-07 r58290)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘xgobi/DESCRIPTION’ ... OK
• this is package ‘xgobi’ version ‘1.2-14’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... NOTE
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
• checking for executable files ... OK
• checking whether package ‘xgobi’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  quadplot: warning in xgobi(mat3, lines = tetralines, rowlab =
  c(vertexlabs, pointlabs), resource = c("*showLines: True",
  "*showAxes: False")): partial argument match of 'resource' to
  'resources'
  xgvis: warning in write(t(edges), file = edgesfile, ncol = 2): partial
  argument match of 'ncol' to 'ncolumns'
  xgvis: warning in write(colors, file = colorfile, ncol = 1): partial
  argument match of 'ncol' to 'ncolumns'
  xgvis: warning in write(glyphs, file = glyphfile, ncol = 1): partial
  argument match of 'ncol' to 'ncolumns'
  xgvis: warning in write(erase, file = erasefile, ncol = 1): partial
  argument match of 'ncol' to 'ncolumns'
  xgvis: warning in write(t(lines), file = linesfile, ncol = 2): partial
  argument match of 'ncol' to 'ncolumns'
  xgvis: warning in write(linecolors, file = linecolorfile, ncol = 1):
  partial argument match of 'ncol' to 'ncolumns'
  xgvis: warning in write(resources, file = resourcefile, ncol = 1):
  partial argument match of 'ncol' to 'ncolumns'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... OK
• checking PDF version of manual ... OK