• using R version 2.10.1 Patched (2010-02-04 r51101)
  • using session charset: UTF-8
  • checking for file 'survrec/DESCRIPTION' ... OK
  • this is package 'survrec' version '1.1-7'
  • package encoding: latin1
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking whether package 'survrec' can be installed ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking data for non-ASCII characters ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable use of $BLAS_LIBS ... OK
  • checking examples ... ERROR
    Running examples in 'survrec-Ex.R' failed.
    The error most likely occurred in:

    > ### * survdiffr
    >
    > flush(stderr()); flush(stdout())
    >
    > ### Name: survdiffr
    > ### Title: Test median survival differences (or other quantile)
    > ### Aliases: survdiffr
    > ### Keywords: survival
    >
    > ### ** Examples
    >
    >
    > data(colon)
    >
    > #We will compare the median survival time for three dukes stages
    > fit<-survdiffr(Survr(hc,time,event)~as.factor(dukes),data=colon,q=0.5)
    > boot.ci(fit$"1")
    [1] "All values of t are equal to 2175 \n Cannot calculate confidence intervals"
    NULL
    > boot.ci(fit$"2")
    Warning in boot.ci(fit$"2") :
    bootstrap variances needed for studentized intervals
    Error in bca.ci(boot.out, conf, index[1L], L = L, t = t.o, t0 = t0.o, :
    estimated adjustment 'w' is infinite
    Calls: boot.ci -> bca.ci
    Execution halted