- using R version 2.10.1 Patched (2010-02-04 r51101)
- using session charset: UTF-8
- checking for file 'survrec/DESCRIPTION' ... OK
- this is package 'survrec' version '1.1-7'
- package encoding: latin1
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking whether package 'survrec' can be installed ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking data for non-ASCII characters ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable use of $BLAS_LIBS ... OK
- checking examples ... ERROR
Running examples in 'survrec-Ex.R' failed.
The error most likely occurred in:
> ### * survdiffr
>
> flush(stderr()); flush(stdout())
>
> ### Name: survdiffr
> ### Title: Test median survival differences (or other quantile)
> ### Aliases: survdiffr
> ### Keywords: survival
>
> ### ** Examples
>
>
> data(colon)
>
> #We will compare the median survival time for three dukes stages
> fit<-survdiffr(Survr(hc,time,event)~as.factor(dukes),data=colon,q=0.5)
> boot.ci(fit$"1")
[1] "All values of t are equal to 2175 \n Cannot calculate confidence intervals"
NULL
> boot.ci(fit$"2")
Warning in boot.ci(fit$"2") :
bootstrap variances needed for studentized intervals
Error in bca.ci(boot.out, conf, index[1L], L = L, t = t.o, t0 = t0.o, :
estimated adjustment 'w' is infinite
Calls: boot.ci -> bca.ci
Execution halted