• using R version 3.0.1 Patched (2013-06-16 r62969)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘slam/DESCRIPTION’ ... OK
• this is package ‘slam’ version ‘0.1-28’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘slam’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... [0s/0s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [4s/4s] OK
  Running ‘abind.R’ [0s/0s]
  Comparing ‘abind.Rout’ to ‘abind.Rout.save’ ... OK
  Running ‘dimgets.R’ [0s/0s]
  Running ‘extract.R’ [0s/0s]
  Comparing ‘extract.Rout’ to ‘extract.Rout.save’ ...243c243
  < Error in x[1, 8] : subscript out of bounds
  ---
  > Error in try(x[1, 8]) : subscript out of bounds
  Running ‘matrix.R’ [0s/0s]
  Comparing ‘matrix.Rout’ to ‘matrix.Rout.save’ ... OK
  Running ‘matrix_dimnames.R’ [0s/0s]
  Comparing ‘matrix_dimnames.Rout’ to ‘matrix_dimnames.Rout.save’ ... OK
  Running ‘rollup.R’ [0s/0s]
  Comparing ‘rollup.Rout’ to ‘rollup.Rout.save’ ... OK
  Running ‘ssa_valid.R’ [0s/0s]
  Comparing ‘ssa_valid.Rout’ to ‘ssa_valid.Rout.save’ ... OK
  Running ‘stm.R’ [0s/0s]
  Comparing ‘stm.Rout’ to ‘stm.Rout.save’ ... OK
  Running ‘stm_rollup.R’ [0s/0s]
  Comparing ‘stm_rollup.Rout’ to ‘stm_rollup.Rout.save’ ... OK
  Running ‘stm_subassign.R’ [0s/0s]
  Comparing ‘stm_subassign.Rout’ to ‘stm_subassign.Rout.save’ ... OK
  Running ‘stm_ttcrossprod.R’ [0s/0s]
  Comparing ‘stm_ttcrossprod.Rout’ to ‘stm_ttcrossprod.Rout.save’ ... OK
  Running ‘stm_valid.R’ [0s/0s]
  Comparing ‘stm_valid.Rout’ to ‘stm_valid.Rout.save’ ... OK
  Running ‘stm_zeros.R’ [0s/0s]
  Comparing ‘stm_zeros.Rout’ to ‘stm_zeros.Rout.save’ ... OK
  Running ‘subassign.R’ [0s/0s]
  Comparing ‘subassign.Rout’ to ‘subassign.Rout.save’ ...65c65,66
  < Warning message:
  ---
  > Error in seq_len(pd)[I] : only 0's may be mixed with negative subscripts
  > In addition: Warning message:
  67c68
  < number of items to replace is not a multiple of replacement length
  ---
  > NAs introduced by coercion
  221c222,224
  < Warning message:
  ---
  > Error in z[-c(.Machine$integer.max + 1, 1)] <- c(1, 2) :
  > only 0's may be mixed with negative subscripts
  > In addition: Warning message:
  223c226
  < number of items to replace is not a multiple of replacement length
  ---
  > NAs introduced by coercion
  Running ‘util.R’ [0s/0s]
  Comparing ‘util.Rout’ to ‘util.Rout.save’ ... OK
• checking PDF version of manual ... OK