* installing to library ‘/home/hornik/tmp/R.check/r-patched/Work/build/Packages’
* installing *source* package ‘popgen’ ...
** libs
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c gen.data.c -o gen.data.o
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c ld.c -o ld.o
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c popdiv.c -o popdiv.o
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c structure.R.c -o structure.R.o
g++ -I/home/hornik/tmp/R.check/r-patched/Work/build/include  -I/usr/local/include    -fpic  -g -O2 -c treesim.cc -o treesim.o
g++ -shared -L/usr/local/lib64 -o popgen.so gen.data.o ld.o popdiv.o structure.R.o treesim.o -L/home/hornik/tmp/R.check/r-patched/Work/build/lib -lR
** R
** inst
** preparing package for lazy loading
** help
Warning: ./man/nps.Rd:32: unknown macro '\arrowvert'
Warning: ./man/nps.Rd:32: unknown macro '\arrowvert'
Warning: ./man/nps.Rd:33: unknown macro '\begin'
Warning: ./man/nps.Rd:34: unknown macro '\sum'
Warning: ./man/nps.Rd:34: unknown macro '\in'
Warning: ./man/nps.Rd:35: unknown macro '\end'
Warning: ./man/nps.Rd:37: unknown macro '\begin'
Warning: ./man/nps.Rd:38: unknown macro '\sum'
Warning: ./man/nps.Rd:38: unknown macro '\frac'
Warning: ./man/nps.Rd:39: unknown macro '\end'
Warning: ./man/nps.Rd:41: unknown macro '\begin'
Warning: ./man/nps.Rd:42: unknown macro '\textrm'
Warning: ./man/nps.Rd:42: unknown macro '\bf'
Warning: ./man/nps.Rd:42: unknown macro '\big'
Warning: ./man/nps.Rd:42: unknown macro '\log'
Warning: ./man/nps.Rd:42: unknown macro '\big'
Warning: ./man/nps.Rd:42: unknown macro '\log'
Warning: ./man/nps.Rd:43: unknown macro '\end'
Warning: ./man/nps.Rd:44: unknown macro '\bf'
Warning: ./man/nps.Rd:44: unknown macro '\hat'
Warning: ./man/nps.Rd:44: unknown macro '\textrm'
Warning: ./man/nps.Rd:46: unknown macro '\subsection'
Warning: ./man/nps.Rd:46: unknown macro '\label'
Warning: ./man/nps.Rd:47: unknown macro '\begin'
Warning: ./man/nps.Rd:48: unknown macro '\item'
Warning: ./man/nps.Rd:49: unknown macro '\item'
Warning: ./man/nps.Rd:50: unknown macro '\begin'
Warning: ./man/nps.Rd:51: unknown macro '\sum'
Warning: ./man/nps.Rd:51: unknown macro '\log'
Warning: ./man/nps.Rd:52: unknown macro '\sqrt'
Warning: ./man/nps.Rd:52: unknown macro '\sum'
Warning: ./man/nps.Rd:52: unknown macro '\log'
Warning: ./man/nps.Rd:53: unknown macro '\end'
Warning: ./man/nps.Rd:54: unknown macro '\item'
Warning: ./man/nps.Rd:55: unknown macro '\begin'
Warning: ./man/nps.Rd:56: unknown macro '\textrm'
Warning: ./man/nps.Rd:56: unknown macro '\log'
Warning: ./man/nps.Rd:57: unknown macro '\end'
Warning: ./man/nps.Rd:59: unknown macro '\begin'
Warning: ./man/nps.Rd:60: unknown macro '\sqrt'
Warning: ./man/nps.Rd:61: unknown macro '\end'
Warning: ./man/nps.Rd:62: unknown macro '\sqrt'
Warning: ./man/nps.Rd:62: unknown macro '\bf'
Warning: ./man/nps.Rd:62: unknown macro '\big'
Warning: ./man/nps.Rd:62: unknown macro '\log'
Warning: ./man/nps.Rd:62: unknown macro '\big'
Warning: ./man/nps.Rd:63: unknown macro '\begin'
Warning: ./man/nps.Rd:64: unknown macro '\hat'
Warning: ./man/nps.Rd:64: unknown macro '\textrm'
Warning: ./man/nps.Rd:64: unknown macro '\textrm'
Warning: ./man/nps.Rd:64: unknown macro '\geq'
Warning: ./man/nps.Rd:64: unknown macro '\textrm'
Warning: ./man/nps.Rd:65: unknown macro '\end'
Warning: ./man/nps.Rd:66: unknown macro '\end'
Warning: ./man/nps.Rd:72: unknown macro '\subsection'
Warning: ./man/popdiv.Rd:161: unexpected '}'
*** installing help indices
** building package indices ...
* DONE (popgen)