• using R version 3.0.1 Patched (2013-05-16 r62757)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘odesolve/DESCRIPTION’ ... OK
• this is package ‘odesolve’ version ‘0.9-9’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘odesolve’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... ERROR
  Running examples in ‘odesolve-Ex.R’ failed
  The error most likely occurred in:
  
  > ### Name: lsoda
  > ### Title: Solve System of ODE (ordinary differential equation)s.
  > ### Aliases: lsoda
  > ### Keywords: math
  >
  > ### ** Examples
  >
  > ### lsexamp -- example from lsoda source code
  >
  > ## names makes this easier to read, but may slow down execution.
  > parms <- c(k1=0.04, k2=1e4, k3=3e7)
  > my.atol <- c(1e-6, 1e-10, 1e-6)
  > times <- c(0,4 * 10^(-1:10))
  > lsexamp <- function(t, y, p)
  + {
  + yd1 <- -p["k1"] * y[1] + p["k2"] * y[2]*y[3]
  + yd3 <- p["k3"] * y[2]^2
  + list(c(yd1,-yd1-yd3,yd3),c(massbalance=sum(y)))
  + }
  > exampjac <- function(t, y, p)
  + {
  + c(-p["k1"], p["k1"], 0,
  +
  + p["k2"]*y[3],
  + - p["k2"]*y[3] - 2*p["k3"]*y[2],
  + 2*p["k3"]*y[2],
  +
  + p["k2"]*y[2], -p["k2"]*y[2], 0
  + )
  + }
  >
  > require(odesolve)
  > ## measure speed (here and below)
  > system.time(
  + out <- lsoda(c(1,0,0),times,lsexamp, parms, rtol=1e-4, atol= my.atol)
  + )
  At line 1155 of file lsoda.f
  Fortran runtime error: Index '2' of dimension 1 of array 'atol' above upper bound of 1