• using R version 2.14.1 Patched (2012-02-04 r58267)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘mboost/DESCRIPTION’ ... OK
• this is package ‘mboost’ version ‘2.1-1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘mboost’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking examples ... OK
• checking differences from ‘mboost-Ex.Rout’ to ‘mboost-Ex.Rout.save’ ... OK
• checking for unstated dependencies in tests ... NOTE
  ‘data(package=)’ call not declared from: ‘mlbench’
• checking tests ... OK
  Running ‘birds_Biometrics.R’
  Comparing ‘birds_Biometrics.Rout’ to ‘birds_Biometrics.Rout.save’ ... OK
  Running ‘bugfixes.R’
  Comparing ‘bugfixes.Rout’ to ‘bugfixes.Rout.save’ ... OK
  Running ‘mboost_illustrations.R’
  Comparing ‘mboost_illustrations.Rout’ to ‘mboost_illustrations.Rout.save’ ... OK
  Running ‘regtest-baselearner.R’
  Comparing ‘regtest-baselearner.Rout’ to ‘regtest-baselearner.Rout.save’ ... OK
  Running ‘regtest-blackboost.R’
  Comparing ‘regtest-blackboost.Rout’ to ‘regtest-blackboost.Rout.save’ ... OK
  Running ‘regtest-family.R’
  Comparing ‘regtest-family.Rout’ to ‘regtest-family.Rout.save’ ... OK
  Running ‘regtest-gamboost.R’
  Comparing ‘regtest-gamboost.Rout’ to ‘regtest-gamboost.Rout.save’ ...319c319,326
  < > newData <- as.data.frame(rbind(colMeans(bodyfat)[-2], colMeans(bodyfat)[-2]+1*sapply(bodyfat, sd)[-2]))
  ---
  > > newData <- as.data.frame(rbind(mean(bodyfat)[-2], mean(bodyfat)[-2]+1*sd(bodyfat)[-2]))
  > Warning messages:
  > 1: mean(<data.frame>) is deprecated.
  > Use colMeans() or sapply(*, mean) instead.
  > 2: mean(<data.frame>) is deprecated.
  > Use colMeans() or sapply(*, mean) instead.
  > 3: sd(<data.frame>) is deprecated.
  > Use sapply(*, sd) instead.
  Running ‘regtest-glmboost.R’
  Comparing ‘regtest-glmboost.Rout’ to ‘regtest-glmboost.Rout.save’ ...300c300,307
  < > newData <- as.data.frame(rbind(colMeans(DF)[-1], colMeans(DF)[-2]+1*sapply(DF, sd)[-1]))
  ---
  > > newData <- as.data.frame(rbind(mean(DF)[-1], mean(DF)[-2]+1*sd(DF)[-1]))
  > Warning messages:
  > 1: mean(<data.frame>) is deprecated.
  > Use colMeans() or sapply(*, mean) instead.
  > 2: mean(<data.frame>) is deprecated.
  > Use colMeans() or sapply(*, mean) instead.
  > 3: sd(<data.frame>) is deprecated.
  > Use sapply(*, sd) instead.
  Running ‘regtest-hatmatrix.R’
  Comparing ‘regtest-hatmatrix.Rout’ to ‘regtest-hatmatrix.Rout.save’ ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... OK
• checking PDF version of manual ... OK