• using R version 3.0.1 Patched (2013-05-20 r62767)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘lpc/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘lpc’ version ‘1.0.1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘lpc’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... NOTE
  prepare_Rd: EstimateLPCFDR.Rd:146: Dropping empty section \keyword
  prepare_Rd: EstimateLPCFDR.Rd:147: Dropping empty section \keyword
  prepare_Rd: EstimateLPCFDR.Rd:64-65: Dropping empty section \note
  prepare_Rd: EstimateLPCFDR.Rd:66: Dropping empty section \seealso
  prepare_Rd: EstimateTFDR.Rd:144: Dropping empty section \keyword
  prepare_Rd: EstimateTFDR.Rd:145: Dropping empty section \keyword
  prepare_Rd: EstimateTFDR.Rd:59-60: Dropping empty section \note
  prepare_Rd: EstimateTFDR.Rd:61: Dropping empty section \seealso
  prepare_Rd: LPC.Rd:205: Dropping empty section \keyword
  prepare_Rd: LPC.Rd:206: Dropping empty section \keyword
  prepare_Rd: LPC.Rd:76-77: Dropping empty section \note
  prepare_Rd: LPC.Rd:78: Dropping empty section \seealso
  prepare_Rd: PlotFDRs.Rd:115: Dropping empty section \keyword
  prepare_Rd: PlotFDRs.Rd:116: Dropping empty section \keyword
  prepare_Rd: PlotFDRs.Rd:18-20: Dropping empty section \details
  prepare_Rd: PlotFDRs.Rd:30-31: Dropping empty section \note
  prepare_Rd: PlotFDRs.Rd:32: Dropping empty section \seealso
  prepare_Rd: PredictiveAdvantage.Rd:159: Dropping empty section \keyword
  prepare_Rd: PredictiveAdvantage.Rd:160: Dropping empty section \keyword
  prepare_Rd: PredictiveAdvantage.Rd:72-73: Dropping empty section \note
  prepare_Rd: PredictiveAdvantage.Rd:74: Dropping empty section \seealso
  prepare_Rd: PrintGeneList.Rd:120: Dropping empty section \keyword
  prepare_Rd: PrintGeneList.Rd:121: Dropping empty section \keyword
  prepare_Rd: PrintGeneList.Rd:24-25: Dropping empty section \details
  prepare_Rd: PrintGeneList.Rd:35-36: Dropping empty section \note
  prepare_Rd: PrintGeneList.Rd:37: Dropping empty section \seealso
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'lpc-internal':
  ‘print.lpcobj’ ‘print.lpcfdrobj’ ‘print.tfdrobj’
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter ‘Writing R documentation files’ in the ‘Writing R
  Extensions’ manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [203s/203s] OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.
  See
  ‘/home/hornik/tmp/R.check/r-patched-ng/Work/PKGS/lpc.Rcheck/00check.log’
  for details.