* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘lda’ ... ** package ‘lda’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/tmp/RtmpRtbUUW/R.INSTALLfd74b68b6c70a/lda/src' gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cvb0.c -o cvb0.o cvb0.c: In function ‘cvb0’: cvb0.c:80:10: warning: unused variable ‘zs’ [-Wunused-variable] 80 | SEXP zs = VECTOR_ELT(assignments, dd); | ^~ gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gibbs.c -o gibbs.o gibbs.c: In function ‘collapsedGibbsSampler’: gibbs.c:720:22: warning: ‘classN’ may be used uninitialized [-Wmaybe-uninitialized] 720 | for (ww=0; ww< classN; ww++){ | ~~^~~~~~~~ gibbs.c:535:7: note: ‘classN’ was declared here 535 | int classN; //number of classes in sLDA minus 1 | ^~~~~~ gibbs.c:812:15: warning: ‘nbeta_one’ may be used uninitialized [-Wmaybe-uninitialized] 812 | INTEGER(nbeta_one)[K * (*z) + (*z2)]--; | ^~~~~~~~~~~~~~~~~~ gibbs.c:591:8: note: ‘nbeta_one’ was declared here 591 | SEXP nbeta_one, nbeta_zero; | ^~~~~~~~~ gibbs.c:814:15: warning: ‘nbeta_zero’ may be used uninitialized [-Wmaybe-uninitialized] 814 | INTEGER(nbeta_zero)[K * (*z) + (*z2)]--; | ^~~~~~~~~~~~~~~~~~~ gibbs.c:591:19: note: ‘nbeta_zero’ was declared here 591 | SEXP nbeta_one, nbeta_zero; | ^~~~~~~~~~ gibbs.c:801:21: warning: ‘nassignments_left’ may be used uninitialized [-Wmaybe-uninitialized] 801 | int* z = &INTEGER(nassignments_left)[nd * dd + ww]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ gibbs.c:592:8: note: ‘nassignments_left’ was declared here 592 | SEXP nassignments_left, nassignments_right; | ^~~~~~~~~~~~~~~~~ gibbs.c:802:22: warning: ‘nassignments_right’ may be used uninitialized [-Wmaybe-uninitialized] 802 | int* z2 = &INTEGER(nassignments_right)[nd * ww + dd]; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ gibbs.c:592:27: note: ‘nassignments_right’ was declared here 592 | SEXP nassignments_left, nassignments_right; | ^~~~~~~~~~~~~~~~~~ In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/R.h:73, from gibbs.c:1: /home/hornik/tmp/R.check/r-patched-gcc/Work/build/include/R_ext/Error.h:68:15: warning: ‘sumcn’ may be used uninitialized [-Wmaybe-uninitialized] 68 | #define error Rf_error gibbs.c:1021:11: note: in expansion of macro ‘error’ 1021 | error("Numerical problems (%g, %g, %g).", dv[dd], | ^~~~~ gibbs.c:948:16: note: ‘sumcn’ was declared here 948 | double sumcn; | ^~~~~ gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o lda.so cvb0.o gibbs.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/tmp/RtmpRtbUUW/R.INSTALLfd74b68b6c70a/lda/src' make[1]: Entering directory '/tmp/RtmpRtbUUW/R.INSTALLfd74b68b6c70a/lda/src' make[1]: Leaving directory '/tmp/RtmpRtbUUW/R.INSTALLfd74b68b6c70a/lda/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-lda/00new/lda/libs ** R ** data ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘lda’ finding HTML links ... done cora html filter.words html lda-package html lda.collapsed.gibbs.sampler html lexicalize html links.as.edgelist html newsgroups html nubbi.collapsed.gibbs.sampler html poliblog html predictive.distribution html predictive.link.probability html read.documents html rtm.collapsed.gibbs.sampler html sampson html slda.predict html top.topic.words html word.counts html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lda)