- using R version 3.5.0 RC (2018-04-16 r74618)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘glmmBUGS/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘glmmBUGS’ version ‘2.4.0’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘glmmBUGS’ can be installed ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [8s/12s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in Makefiles ... OK
- checking for GNU extensions in Makefiles ... OK
- checking include directives in Makefiles ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [3s/4s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [4s/5s] OK
Running ‘bym.R’ [2s/3s]
Running ‘openbugs.R’ [1s/1s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking re-building of vignette outputs ... [2s/2s] WARNING
Error in re-building vignettes:
...
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, :
there is no package called ‘R2jags’
make[1]: Entering directory '/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/glmmBUGS.Rcheck/vign_test/glmmBUGS/vignettes'
xelatex -interaction=nonstopmode jags.tex;
This is XeTeX, Version 3.14159265-2.6-0.99998 (TeX Live 2017/Debian) (preloaded format=xelatex)
restricted \write18 enabled.
entering extended mode
(./jags.tex
LaTeX2e <2017-04-15>
Babel <3.18> and hyphenation patterns for 84 language(s) loaded.
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2014/09/29 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo))
(/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty)
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty)
(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
(/home/hornik/tmp/R.check/r-patched-gcc/Work/build/share/texmf/tex/latex/Sweave
.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg)
(/usr/share/texlive/texmf-dist/tex/latex/graphics-def/xetex.def)))
(/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix
<2008/02/07> (tvz)) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def))
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)
(/usr/share/texmf/tex/latex/lm/t1lmr.fd))
(/usr/share/texlive/texmf-dist/tex/latex/ae/ae.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty
(/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)
(/usr/share/texlive/texmf-dist/tex/latex/ae/t1aer.fd))))
No file jags.aux.
(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd)
*geometry* driver: auto-detecting
*geometry* detected driver: xetex
(/usr/share/texlive/texmf-dist/tex/latex/ae/t1aett.fd)
(/home/hornik/tmp/R.check/r-patched-gcc/Work/build/share/texmf/tex/latex/ts1aet
t.fd) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [1]Syntax Error: Invalid page count 0
Syntax Error: Cannot allocate page cache
Segmentation fault
Makefile:10: recipe for target 'jags.pdf' failed
make[1]: *** [jags.pdf] Error 139
make[1]: Leaving directory '/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/glmmBUGS.Rcheck/vign_test/glmmBUGS/vignettes'
Error in buildVignettes(dir = "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/glmmBUGS.Rcheck/vign_test/glmmBUGS") :
running ‘make’ failed
Execution halted
- checking PDF version of manual ... OK
- DONE
Status: 1 WARNING