• using R version 3.0.2 Patched (2013-12-11 r64449)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘glmmBUGS/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘glmmBUGS’ version ‘2.0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘glmmBUGS’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking dependencies in R code ... NOTE
  ‘library’ or ‘require’ calls to packages already attached by Depends:
  ‘RandomFields’ ‘abind’ ‘raster’
  Please remove these calls from your code.
  Packages in Depends field not imported from:
  ‘RandomFields’ ‘abind’ ‘nlme’ ‘raster’ ‘spdep’
  These packages need to be imported from for the case when
  this namespace is loaded but not attached.
  See the information on DESCRIPTION files in the chapter ‘Creating R
  packages’ of the ‘Writing R Extensions’ manual.
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... NOTE
  prepare_Rd: CondSimuPosterior.Rd:51-52: Dropping empty section \examples
  prepare_Rd: addSpatial.Rd:69: Dropping empty section \keyword
  prepare_Rd: addSpatial.Rd:32: Dropping empty section \seealso
  prepare_Rd: binToBinom.Rd:16-17: Dropping empty section \details
  prepare_Rd: binToBinom.Rd:26-27: Dropping empty section \note
  prepare_Rd: binToBinom.Rd:24: Dropping empty section \references
  prepare_Rd: binToBinom.Rd:28: Dropping empty section \seealso
  prepare_Rd: checkChain.Rd:22: Dropping empty section \note
  prepare_Rd: checkChain.Rd:20: Dropping empty section \references
  prepare_Rd: cholInvArray.Rd:57: Dropping empty section \keyword
  prepare_Rd: cholInvArray.Rd:28-29: Dropping empty section \note
  prepare_Rd: cholInvArray.Rd:27: Dropping empty section \author
  prepare_Rd: cholInvArray.Rd:26: Dropping empty section \references
  prepare_Rd: cholInvArray.Rd:30: Dropping empty section \seealso
  prepare_Rd: getRaggedSeq.Rd:15-17: Dropping empty section \details
  prepare_Rd: getRaggedSeq.Rd:23-24: Dropping empty section \note
  prepare_Rd: getRaggedSeq.Rd:21: Dropping empty section \references
  prepare_Rd: getRaggedSeq.Rd:26-27: Dropping empty section \examples
  prepare_Rd: glmmPQLstrings.Rd:30: Dropping empty section \note
  prepare_Rd: glmmPQLstrings.Rd:28: Dropping empty section \references
  prepare_Rd: muscleResult.Rd:15-17: Dropping empty section \source
  prepare_Rd: muscleResult.Rd:18-20: Dropping empty section \references
  prepare_Rd: popDataAdjMat.Rd:9-10: Dropping empty section \format
  prepare_Rd: popDataAdjMat.Rd:16-18: Dropping empty section \source
  prepare_Rd: popDataAdjMat.Rd:19-21: Dropping empty section \references
  prepare_Rd: restoreParams.Rd:17-18: Dropping empty section \details
  prepare_Rd: restoreParams.Rd:33: Dropping empty section \references
  prepare_Rd: restoreParams.Rd:42-44: Dropping empty section \examples
  prepare_Rd: rongelapUTM.Rd:11-12: Dropping empty section \format
  prepare_Rd: rongelapUTM.Rd:21-22: Dropping empty section \references
  prepare_Rd: spatialFittedValues.Rd:20-21: Dropping empty section \details
  prepare_Rd: spatialFittedValues.Rd:30-31: Dropping empty section \note
  prepare_Rd: spatialFittedValues.Rd:25-26: Dropping empty section \references
  prepare_Rd: spatialFittedValues.Rd:34-35: Dropping empty section \seealso
  prepare_Rd: startingFunction.Rd:27: Dropping empty section \note
  prepare_Rd: startingFunction.Rd:25: Dropping empty section \references
  prepare_Rd: summaryChain.Rd:17-19: Dropping empty section \details
  prepare_Rd: summaryChain.Rd:28-29: Dropping empty section \note
  prepare_Rd: summaryChain.Rd:26: Dropping empty section \references
  prepare_Rd: winBugsRaggedArray.Rd:39: Dropping empty section \note
  prepare_Rd: writeBugsModel.Rd:61-63: Dropping empty section \note
  prepare_Rd: writeBugsModel.Rd:67-69: Dropping empty section \seealso
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [18s/34s] OK
• checking PDF version of manual ... OK
  NOTE: There were 2 notes.