• using R version 2.14.1 Patched (2012-02-07 r58290)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘gRain/DESCRIPTION’ ... OK
• this is package ‘gRain’ version ‘0.8.12’
• package encoding: latin1
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘gRain’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  .as.setmat: warning in matrix(0, nr = length(glist), nc = length(vn)):
  partial argument match of 'nr' to 'nrow'
  .as.setmat: warning in matrix(0, nr = length(glist), nc = length(vn)):
  partial argument match of 'nc' to 'ncol'
  predict.grain : <anonymous>: warning in matrix(NA, nc = length(a), nr =
  nrow(newdata)): partial argument match of 'nr' to 'nrow'
  predict.grain : <anonymous>: warning in matrix(NA, nc = length(a), nr =
  nrow(newdata)): partial argument match of 'nc' to 'ncol'
  simulate.grain: warning in matrix(0, nr = nsim, nc =
  length(nodeNames(object))): partial argument match of 'nr' to 'nrow'
  simulate.grain: warning in matrix(0, nr = nsim, nc =
  length(nodeNames(object))): partial argument match of 'nc' to 'ncol'
  simulate.grain: warning in matrix(0, nr = nsim, nc = length(r2)):
  partial argument match of 'nr' to 'nrow'
  simulate.grain: warning in matrix(0, nr = nsim, nc = length(r2)):
  partial argument match of 'nc' to 'ncol'
  splitVec.default: warning in matrix(val, nc = lev): partial argument
  match of 'nc' to 'ncol'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking examples ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... OK
• checking PDF version of manual ... OK