• using R version 2.15.0 Patched (2012-05-19 r59366)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘endogMNP/DESCRIPTION’ ... OK
• this is package ‘endogMNP’ version ‘0.2-1’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘endogMNP’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘endogMNP/R/onAttach.R’:
  .onAttach calls:
  cat(paste(pkg, ": ", title, "\nVersion: ", ver, "\n", sep = ""))
  
  Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
  See section ‘Good practice’ in ?.onAttach.
  
  .onAttach: warning in packageDescription(pkg, lib = mylib): partial
  argument match of 'lib' to 'lib.loc'
  XandYmatrix.endogMNP: warning in matrix(NA, nc = p1, nr = length(Y1)):
  partial argument match of 'nr' to 'nrow'
  XandYmatrix.endogMNP: warning in matrix(NA, nc = p1, nr = length(Y1)):
  partial argument match of 'nc' to 'ncol'
  XandYmatrix.endogMNP: warning in matrix(cbind(Y1, naMat), nc = p1 + 1):
  partial argument match of 'nc' to 'ncol'
  XandYmatrix.endogMNP: warning in matrix(Y, nc = 1, byrow = TRUE):
  partial argument match of 'nc' to 'ncol'
  XandYmatrix.endogMNP: warning in matrix(0, nr = ((p1 - 1 + (p1 - 1) *
  (p2 - 1)) * length(Y1)), nc = ((length(selX[1, ])) * (p1 - 1) +
  (length(outX[1, ])) * (p1 - 1) * (p2 - 1))): partial argument match
  of 'nr' to 'nrow'
  XandYmatrix.endogMNP: warning in matrix(0, nr = ((p1 - 1 + (p1 - 1) *
  (p2 - 1)) * length(Y1)), nc = ((length(selX[1, ])) * (p1 - 1) +
  (length(outX[1, ])) * (p1 - 1) * (p2 - 1))): partial argument match
  of 'nc' to 'ncol'
  XandYmatrix.endogMNP: warning in matrix(0, nr = ((p1 - 1 + p1 * (p2 -
  1)) * length(Y1)), nc = ((length(selX[1, ])) * (p1 - 1) +
  (length(outX[1, ])) * p1 * (p2 - 1))): partial argument match of 'nr'
  to 'nrow'
  XandYmatrix.endogMNP: warning in matrix(0, nr = ((p1 - 1 + p1 * (p2 -
  1)) * length(Y1)), nc = ((length(selX[1, ])) * (p1 - 1) +
  (length(outX[1, ])) * p1 * (p2 - 1))): partial argument match of 'nc'
  to 'ncol'
  XandYmatrix.endogMNP: warning in matrix(selX[i, ], nr = 1): partial
  argument match of 'nr' to 'nrow'
  XandYmatrix.endogMNP: warning in matrix(outX[i, ], nr = 1): partial
  argument match of 'nr' to 'nrow'
  XandYmatrix.endogMNP: warning in matrix(0, nr = dim(selPart)[1], nc =
  dim(outPart)[2]): partial argument match of 'nr' to 'nrow'
  XandYmatrix.endogMNP: warning in matrix(0, nr = dim(selPart)[1], nc =
  dim(outPart)[2]): partial argument match of 'nc' to 'ncol'
  XandYmatrix.endogMNP: warning in matrix(0, nr = dim(outPart)[1], nc =
  dim(selPart)[2]): partial argument match of 'nr' to 'nrow'
  XandYmatrix.endogMNP: warning in matrix(0, nr = dim(outPart)[1], nc =
  dim(selPart)[2]): partial argument match of 'nc' to 'ncol'
  XandYmatrix.endogMNP: warning in matrix(xMatrix, nc = 1, byrow = TRUE):
  partial argument match of 'nc' to 'ncol'
  endogMNP : captureFormula: warning in match.call(expand = FALSE):
  partial argument match of 'expand' to 'expand.dots'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... NONE
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-patched/Work/PKGS/endogMNP.Rcheck/00check.log’
  for details.