• using R version 2.15.0 Patched (2012-05-19 r59366)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘cusp/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘cusp’ version ‘2.2’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘cusp’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  cusp.logist.objf: warning in cusp.subspacerss(pred = X, dep = Y):
  partial argument match of 'pred' to 'predictors'
  cusp.logist.objf: warning in cusp.subspacerss(pred = X, dep = Y):
  partial argument match of 'dep' to 'dependents'
  print.summary.cusp: warning in print.default(x$deviance.resid, digits =
  digits, na = "", print.gap = 2): partial argument match of 'na' to
  'na.print'
  print.summary.cusp: warning in symnum(correl, abbr.col = NULL): partial
  argument match of 'abbr.col' to 'abbr.colnames'
  summary.cusp: warning in cusp.subspacerss(dep = object$x$X.y, pred =
  cbind(object$x$X.alpha, object$x$X.beta)): partial argument match of
  'pred' to 'predictors'
  summary.cusp: warning in cusp.subspacerss(dep = object$x$X.y, pred =
  cbind(object$x$X.alpha, object$x$X.beta)): partial argument match of
  'dep' to 'dependents'
  vcov.cusp: warning in summary.cusp(object, corr = FALSE, logist =
  FALSE, ...): partial argument match of 'corr' to 'correlation'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking examples ... [30s/30s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [28s/28s] OK
• checking re-building of vignette PDFs ... [37s/39s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-patched/Work/PKGS/cusp.Rcheck/00check.log’
  for details.