• using R version 2.10.0 Patched (2009-11-22 r50534)
• using session charset: UTF-8
• checking for file 'coin/DESCRIPTION' ... OK
• this is package 'coin' version '1.0-8'
• checking package name space information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'coin' can be installed ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the name space can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking data for non-ASCII characters ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $BLAS_LIBS ... OK
• checking examples ... OK
• checking differences from 'coin-Ex.Rout' to 'coin-Ex.Rout.save' ...
  4,5c4,5
  < > cleanEx()
  < > nameEx("ContingencyTests")
  ---
  > > assign(".oldNS", loadedNamespaces(), pos = 'CheckExEnv')
  > > cleanEx(); nameEx("ContingencyTests")
  142,143c142
  < > cleanEx()
  < > nameEx("IndependenceTest")
  ---
  > > cleanEx(); nameEx("IndependenceTest")
  203,204c202
  < > cleanEx()
  < > nameEx("LocationTests")
  ---
  > > cleanEx(); nameEx("LocationTests")
  376,377c374
  < > cleanEx()
  < > nameEx("MarginalHomogeneityTest")
  ---
  > > cleanEx(); nameEx("MarginalHomogeneityTest")
  445,446c442
  < > cleanEx()
  < > nameEx("MaxstatTest")
  ---
  > > cleanEx(); nameEx("MaxstatTest")
  466c462
  < maxT = 4.3139, p-value = 0.0001796
  ---
  > maxT = 4.3139, p-value = 0.0001256
  507c503
  < maxT = 3.5691, p-value = 0.004179
  ---
  > maxT = 3.5691, p-value = 0.004194
  521c517
  < maxT = 2.4033, p-value = 0.1565
  ---
  > maxT = 2.4033, p-value = 0.1554
  531,532c527
  < > cleanEx()
  < > nameEx("PermutationDistribution")
  ---
  > > cleanEx(); nameEx("PermutationDistribution")
  576,577c571
  < > cleanEx()
  < > nameEx("ScaleTests")
  ---
  > > cleanEx(); nameEx("ScaleTests")
  667,668c661
  < > cleanEx()
  < > nameEx("SpearmanTest")
  ---
  > > cleanEx(); nameEx("SpearmanTest")
  694,695c687
  < > cleanEx()
  < > nameEx("SurvTest")
  ---
  > > cleanEx(); nameEx("SurvTest")
  795,796c787
  < > cleanEx()
  < > nameEx("SymmetryTests")
  ---
  > > cleanEx(); nameEx("SymmetryTests")
  959,960c950
  < > cleanEx()
  < > nameEx("Transformations")
  ---
  > > cleanEx(); nameEx("Transformations")
  1119,1120c1109
  < > cleanEx()
  < > nameEx("alpha")
  ---
  > > cleanEx(); nameEx("alpha")
  1145,1146c1134
  < > cleanEx()
  < > nameEx("alzheimer")
  ---
  > > cleanEx(); nameEx("alzheimer")
  1180,1181c1168
  < > cleanEx()
  < > nameEx("asat")
  ---
  > > cleanEx(); nameEx("asat")
  1208,1209c1195
  < > cleanEx()
  < > nameEx("expectation-methods")
  ---
  > > cleanEx(); nameEx("expectation-methods")
  1293,1294c1279
  < > cleanEx()
  < > nameEx("glioma")
  ---
  > > cleanEx(); nameEx("glioma")
  1414,1415c1399
  < > cleanEx()
  < > nameEx("hohnloser")
  ---
  > > cleanEx(); nameEx("hohnloser")
  1444,1445c1428
  < > cleanEx()
  < > nameEx("jobsatisfaction")
  ---
  > > cleanEx(); nameEx("jobsatisfaction")
  1472,1473c1455
  < > cleanEx()
  < > nameEx("mercuryfish")
  ---
  > > cleanEx(); nameEx("mercuryfish")
  1540c1522
  < [1] 0.007140628
  ---
  > [1] 0.007050271
  1542c1524
  < 0.006371664 0.007909593
  ---
  > 0.006381220 0.007719323
  1548c1530
  < control 0.007991569 0.01726738 0.03830126
  ---
  > control 0.00719172 0.01726738 0.03836982
  1553,1554c1535
  < > cleanEx()
  < > nameEx("neuropathy")
  ---
  > > cleanEx(); nameEx("neuropathy")
  1603,1604c1584
  < > cleanEx()
  < > nameEx("ocarcinoma")
  ---
  > > cleanEx(); nameEx("ocarcinoma")
  1633,1634c1613
  < > cleanEx()
  < > nameEx("photocar")
  ---
  > > cleanEx(); nameEx("photocar")
  1681,1682c1660
  < > cleanEx()
  < > nameEx("pvalue-methods")
  ---
  > > cleanEx(); nameEx("pvalue-methods")
  1735,1736c1713
  < > cleanEx()
  < > nameEx("rotarod")
  ---
  > > cleanEx(); nameEx("rotarod")
  1783,1784c1760
  < > cleanEx()
  < > nameEx("sphase")
  ---
  > > cleanEx(); nameEx("sphase")
  1802c1778
  < maxT = 2.3966, p-value = 0.1588
  ---
  > maxT = 2.3966, p-value = 0.1591
  1817c1793
  < maxT = 2.4033, p-value = 0.1562
  ---
  > maxT = 2.4033, p-value = 0.1567
  1827,1828c1803
  < > cleanEx()
  < > nameEx("statistic-methods")
  ---
  > > cleanEx(); nameEx("statistic-methods")
  1885,1886c1860
  < > cleanEx()
  < > nameEx("treepipit")
  ---
  > > cleanEx(); nameEx("treepipit")
  1907c1881
  < maxT = 4.3139, p-value = 0.0006596
  ---
  > maxT = 4.3139, p-value = 0.0006695
  OK
• checking tests ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking PDF version of manual ... OK