* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘biomod2’ ... ** package ‘biomod2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Checking Models arguments... ** help *** installing help indices converting help for package ‘biomod2’ finding HTML links ... done BIOMOD.ensemble.models.out html BIOMOD.formated.data.PA html BIOMOD.formated.data html BIOMOD.models.options html BIOMOD.models.out html BIOMOD.projection.out html BIOMOD.stored.data html BIOMOD_ConvertOldRun-deprecated html BIOMOD_CrossValidation-deprecated html BIOMOD_EnsembleForecasting html BIOMOD_EnsembleModeling html BIOMOD_FormatingData html BIOMOD_LoadModels html BIOMOD_Modeling html BIOMOD_ModelingOptions html BIOMOD_PresenceOnly html BIOMOD_Projection html BIOMOD_RangeSize html BIOMOD_Tuning html BIOMOD_cv-deprecated html BIOMOD_presenceonly-deprecated html BIOMOD_tuning-deprecated html BinaryTransformation-deprecated html CustomIndexMaker-deprecated html DataSpecies html FilteringTransformation-deprecated html Find.Optim.Stat-deprecated html Print_Default_ModelingOptions-deprecated html ProbDensFunc-deprecated html bioclim_current html bioclim_future html biomod2-deprecated html biomod2_ensemble_model html biomod2_model html bm_BinaryTransformation html bm_CVnnet html bm_CrossValidation html bm_FindOptimStat html bm_MakeFormula html bm_PlotEvalBoxplot html bm_PlotEvalMean html bm_PlotRangeSize html bm_PlotResponseCurves html bm_PlotVarImpBoxplot html bm_PseudoAbsences html bm_RunModelsLoop html bm_SRE html bm_SampleBinaryVector html bm_SampleFactorLevels html bm_VariablesImportance html calculate.stat-deprecated html check_duplicated_cells html dot-categorical2numeric html dot-check_bytes_format html dot-get_categorical_names html dot-get_env_class html dot-load_gam_namespace html dot-transform.outputs.array-deprecated html dot-transform.outputs.list-deprecated html dot-transform_model.as.col html getStatOptimValue-deprecated html getters.bm html getters.out html load_stored_object html makeFormula-deprecated html models_scores_graph-deprecated html plot html predict.bm html predict.em html predict2.bm html predict2.em html rast.has.values html response.plot-deprecated html response.plot2-deprecated html sample.factor.levels-deprecated html sre-deprecated html summary html update_objects-deprecated html variables_importance-deprecated html zzz_bm html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biomod2)