• using R version 2.15.0 Patched (2012-05-19 r59366)
  • using platform: x86_64-unknown-linux-gnu (64-bit)
  • using session charset: UTF-8
  • checking for file ‘bcrm/DESCRIPTION’ ... OK
  • checking extension type ... Package
  • this is package ‘bcrm’ version ‘0.3’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking whether package ‘bcrm’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    HTGamma: no visible binding for global variable ‘N1’
    HTGamma: no visible global function definition for ‘pow’
    HTGamma: no visible binding for global variable ‘d’
    HTGamma: no visible binding for global variable ‘alpha’
    HTLogNormal: no visible binding for global variable ‘N1’
    HTLogNormal: no visible global function definition for ‘pow’
    HTLogNormal: no visible binding for global variable ‘d’
    HTLogNormal: no visible binding for global variable ‘alpha’
    HTLogNormal: no visible binding for global variable ‘p2’
    HTUnif: no visible binding for global variable ‘N1’
    HTUnif: no visible global function definition for ‘pow’
    HTUnif: no visible binding for global variable ‘d’
    HTUnif: no visible binding for global variable ‘alpha’
    LogisticGamma: no visible binding for global variable ‘N1’
    LogisticGamma: no visible binding for global variable ‘alpha’
    LogisticGamma: no visible binding for global variable ‘d’
    LogisticLogNormal: no visible binding for global variable ‘N1’
    LogisticLogNormal: no visible binding for global variable ‘alpha’
    LogisticLogNormal: no visible binding for global variable ‘d’
    LogisticLogNormal: no visible binding for global variable ‘p2’
    LogisticUnif: no visible binding for global variable ‘N1’
    LogisticUnif: no visible binding for global variable ‘alpha’
    LogisticUnif: no visible binding for global variable ‘d’
    Posterior.exact: multiple local function definitions for
    ‘int.dose.mean’ with different formal arguments
    Posterior.exact: multiple local function definitions for ‘int.dose.sd’
    with different formal arguments
    Posterior.exact: multiple local function definitions for ‘lik’ with
    different formal arguments
    Posterior.exact.sim: multiple local function definitions for
    ‘int.dose.mean’ with different formal arguments
    Posterior.exact.sim: multiple local function definitions for ‘lik’ with
    different formal arguments
    PowerGamma: no visible binding for global variable ‘N1’
    PowerGamma: no visible global function definition for ‘pow’
    PowerGamma: no visible binding for global variable ‘d’
    PowerGamma: no visible binding for global variable ‘alpha’
    PowerLogNormal: no visible binding for global variable ‘N1’
    PowerLogNormal: no visible global function definition for ‘pow’
    PowerLogNormal: no visible binding for global variable ‘d’
    PowerLogNormal: no visible binding for global variable ‘alpha’
    PowerLogNormal: no visible binding for global variable ‘p2’
    PowerUnif: no visible binding for global variable ‘N1’
    PowerUnif: no visible global function definition for ‘pow’
    PowerUnif: no visible binding for global variable ‘d’
    PowerUnif: no visible binding for global variable ‘alpha’
    TwoPLogisticLogNormal: no visible binding for global variable ‘N1’
    TwoPLogisticLogNormal: no visible global function definition for
    ‘logit<-’
    TwoPLogisticLogNormal: no visible binding for global variable
    ‘log.alpha’
    TwoPLogisticLogNormal: no visible binding for global variable ‘d’
    TwoPLogisticLogNormal: no visible global function definition for
    ‘inverse’
    TwoPLogisticLogNormal: no visible binding for global variable ‘p2’
    plot.bcrm: no visible binding for global variable ‘est’
    plot.bcrm: no visible binding for global variable ‘target.tox’
    plot.bcrm: no visible binding for global variable ‘q2.5’
    plot.bcrm: no visible binding for global variable ‘q97.5’
    plot.bcrm: no visible binding for global variable ‘q50’
    plot.bcrm: no visible binding for global variable ‘q25’
    plot.bcrm: no visible binding for global variable ‘q75’
    plot.bcrm: no visible binding for global variable ‘ndose’
    plot.bcrm: no visible binding for global variable ‘tox.cutpoints’
    plot.bcrm: no visible binding for global variable ‘xmin’
    plot.bcrm: no visible binding for global variable ‘ymin’
    plot.bcrm: no visible binding for global variable ‘xmax’
    plot.bcrm: no visible binding for global variable ‘ymax’
    plot.bcrm: no visible binding for global variable ‘Loss’
    plot.bcrm: no visible binding for global variable ‘Outcome’
    plot.bcrm.sim: no visible binding for global variable ‘patient’
    plot.bcrm.sim: no visible binding for global variable ‘traj’
    plot.bcrm.sim: no visible binding for global variable ‘Statistic’
    plot.bcrm.sim: no visible binding for global variable ‘..density..’
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking examples ... [15s/15s] OK
  • checking PDF version of manual ... OK
    NOTE: There was 1 note.
    See
    ‘/home/hornik/tmp/R.check/r-patched/Work/PKGS/bcrm.Rcheck/00check.log’
    for details.