• using R version 2.14.1 Patched (2012-02-04 r58267)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘XML/DESCRIPTION’ ... OK
• this is package ‘XML’ version ‘3.9-4’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘XML’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  addParentNode: no visible binding for global variable ‘.this’
  addParentNode: no visible binding for '<<-' assignment to ‘.children’
  addParentNode: no visible binding for global variable ‘.children’
  addParentNode: no visible binding for '<<-' assignment to ‘.parents’
  addParentNode: no visible binding for global variable ‘.parents’
  addParentNode: no visible binding for '<<-' assignment to ‘.nodes’
  addParentNode: no visible binding for global variable ‘.nodes’
  catalogDump: warning in xmlTreeParse(fileName, useInternal = TRUE):
  partial argument match of 'useInternal' to 'useInternalNodes'
  fixXMLNamespaces: warning in grep("^Namespace prefix .* not defined",
  unique(environment(e)$messages), val = TRUE): partial argument match
  of 'val' to 'value'
  newXMLDoc: no visible binding for global variable ‘doc’
  xmlFlatListTree : f: no visible binding for global variable ‘nodeNames’
  xmlFlatListTree : f: no visible binding for global variable ‘idx’
  xmlFlatListTree : addNode: no visible binding for global variable
  ‘.this’
  xmlFlatListTree : addNode: no visible binding for '<<-' assignment to
  ‘nodeSet’
  xmlFlatListTree : addNode: no visible binding for global variable
  ‘nodeSet’
  xmlFlatListTree : addNode: no visible binding for global variable ‘idx’
  xmlFlatListTree : addNode: no visible binding for '<<-' assignment to
  ‘nodeNames’
  xmlFlatListTree : addNode: no visible binding for global variable
  ‘nodeNames’
  xmlFlatListTree : addNode: no visible binding for '<<-' assignment to
  ‘idx’
  xmlFlatListTree : addNode: no visible binding for '<<-' assignment to
  ‘parentCount’
  xmlFlatListTree : addNode: no visible binding for global variable
  ‘parentCount’
  xmlFlatListTree : addNode: no visible binding for '<<-' assignment to
  ‘.parents’
  xmlFlatListTree : addNode: no visible binding for global variable
  ‘.parents’
  xmlFlatListTree : addNode: no visible binding for '<<-' assignment to
  ‘.children’
  xmlFlatListTree : addNode: no visible binding for global variable
  ‘.children’
  xmlFlatListTree : <anonymous>: no visible binding for global variable
  ‘e’
  xmlFlatListTree : .tidy: no visible binding for '<<-' assignment to
  ‘.nodes’
  xmlFlatTree : f: no visible binding for global variable ‘.nodes’
  xmlFlatTree : addNode: no visible binding for global variable ‘.this’
  xmlFlatTree : addNode: no visible binding for '<<-' assignment to
  ‘.parents’
  xmlFlatTree : addNode: no visible binding for global variable
  ‘.parents’
  xmlFlatTree : addNode: no visible binding for '<<-' assignment to
  ‘.children’
  xmlFlatTree : addNode: no visible binding for global variable
  ‘.children’
  xmlFlatTree : addNode: no visible binding for '<<-' assignment to
  ‘.nodes’
  xmlFlatTree : addNode: no visible binding for global variable ‘.nodes’
  xmlFlatTree : <anonymous>: no visible binding for global variable ‘e’
  xmlHashTree : addNode: warning in assign(id, parent, env = .parents):
  partial argument match of 'env' to 'envir'
  xmlHashTree : .tidy: no visible binding for '<<-' assignment to
  ‘.nodes’
  xmlOutputBuffer : addOpenTag: warning in matrix(c(tag,
  ifelse(is.null(ns), "", ns), ifelse(is.null(xmlns), "", xmlns)), nr =
  1, dimnames = list(NULL, c("tagname", "nsprefix", "nsURI"))): partial
  argument match of 'nr' to 'nrow'
  xmlTangle: no visible global function definition for ‘tangleR’
• checking Rd files ... NOTE
  prepare_Rd: XMLCodeFile-class.Rd:65-66: Dropping empty section \examples
  prepare_Rd: XMLNode-class.Rd:43-46: Dropping empty section ‘Slots’
  prepare_Rd: asXMLTreeNode.Rd:43-44: Dropping empty section \examples
  prepare_Rd: coerce.Rd:15-16: Dropping empty section \usage
  prepare_Rd: compareXMLDocs.Rd:29-30: Dropping empty section \references
  prepare_Rd: getRelativeURL.Rd:44-45: Dropping empty section \examples
  prepare_Rd: isXMLString.Rd:39-40: Dropping empty section \details
  prepare_Rd: isXMLString.Rd:41-43: Dropping empty section \value
  prepare_Rd: isXMLString.Rd:44-45: Dropping empty section \references
  prepare_Rd: makeClassTemplate.Rd:36-38: Dropping empty section \details
  prepare_Rd: makeClassTemplate.Rd:57-59: Dropping empty section \examples
  prepare_Rd: newXMLNamespace.Rd:43-44: Dropping empty section \examples
  prepare_Rd: removeXMLNamespaces.Rd:24-25: Dropping empty section \details
  prepare_Rd: removeXMLNamespaces.Rd:26-28: Dropping empty section \value
  prepare_Rd: removeXMLNamespaces.Rd:29-30: Dropping empty section \references
  prepare_Rd: removeXMLNamespaces.Rd:37-38: Dropping empty section \seealso
  prepare_Rd: removeXMLNamespaces.Rd:39-41: Dropping empty section \examples
  prepare_Rd: schema-class.Rd:34-36: Dropping empty section ‘Slots’
  prepare_Rd: xmlClone.Rd:44-45: Dropping empty section \examples
  prepare_Rd: xmlParserContextFunction.Rd:40-41: Dropping empty section \examples
  prepare_Rd: xmlSearchNs.Rd:36-38: Dropping empty section \examples
  prepare_Rd: xmlSerializeHook.Rd:36-37: Dropping empty section \value
  prepare_Rd: xmlToS4.Rd:33-35: Dropping empty section \examples
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... NOTE
  Warning in if (deparse(e[[1L]]) %in% c("utils::data", "utils:::data")) { :
  the condition has length > 1 and only the first element will be used
  ‘library’ or ‘require’ call not declared from: ‘RCurl’
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable compilation flags in Makevars ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... NOTE
  File ‘/home/hornik/tmp/R.check/r-patched/Work/build/Packages/XML/libs/XML.so’:
  Found ‘stderr’, possibly from ‘stderr’ (C)
  
  Compiled code should not call functions which might terminate R nor
  write to stdout/stderr instead of to the console. The detected symbols
  are linked into the code but might come from libraries and not actually
  be called.
  
  See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
• checking examples ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ... OK
  Running ‘gc.R’
  Running ‘gc1.R’
  Running ‘gc2.R’
  Running ‘parent.R’
  Running ‘testNew.R’
  Running ‘toList.R’
  Running ‘tt.R’
• checking PDF version of manual ... OK