• using R version 2.15.0 Patched (2012-05-19 r59366)
  • using platform: x86_64-unknown-linux-gnu (64-bit)
  • using session charset: UTF-8
  • checking for file ‘SRPM/DESCRIPTION’ ... OK
  • this is package ‘SRPM’ version ‘0.1-6’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking whether package ‘SRPM’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    File ‘SRPM/R/zzz.R’:
    .onLoad calls:
    require(pkg, quietly = TRUE, character.only = TRUE)

    Package startup functions should not change the search path.
    See section ‘Good practice’ in ?.onAttach.
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking installed files from ‘inst/doc’ ... NOTE
    The following files are already in R: ‘jss.bst’
    Please remove them from your package.
    The following files should probably not be installed:
    ‘SRPM.tex’

    Consider the use of a .Rinstignore file: see ‘Writing R Extensions’,
    or move the vignette sources from ‘inst/doc’ to ‘vignettes’.
  • checking examples ... [1s/1s] OK
  • checking for unstated dependencies in tests ... OK
  • checking tests ... [1s/1s] OK
    Running ‘reg-tests.R’ [1s/1s]
    Comparing ‘reg-tests.Rout’ to ‘reg-tests.Rout.save’ ...9c9
    < [1] "/home/hornik/tmp/R.check/r-patched/Work/build/Packages/SRPM/SRP-ex/srp_simple"
    ---
    > [1] "/Users/rdpeng/projects/R-packages/SRPM.Rcheck/SRPM/SRP-ex/srp_simple"
    24c24
    < .. .. ..@ dir : chr "/home/hornik/tmp/R.check/r-patched/Work/build/Packages/SRPM/SRP-ex/srp_simple/cacheDB/FitLinearModel"
    ---
    > .. .. ..@ dir : chr "/Users/rdpeng/projects/R-packages/SRPM.Rcheck/SRPM/SRP-ex/srp_simple/cacheDB/FitLinearModel"
    40,41c40,55
    < ERROR: unable to run code chunk 3
    < there is no package called 'xtable'
    ---
    > % latex table generated in R 2.12.0 by xtable 1.5-6 package
    > % Mon Apr 12 11:22:33 2010
    > \begin{table}[ht]
    > \begin{center}
    > \begin{tabular}{rrrrr}
    > \hline
    > & Estimate & Std. Error & t value & Pr($>$$|$t$|$) \\
    > \hline
    > (Intercept) & -64.3421 & 23.0547 & -2.79 & 0.0062 \\
    > Temp & 1.6521 & 0.2535 & 6.52 & 0.0000 \\
    > Wind & -3.3336 & 0.6544 & -5.09 & 0.0000 \\
    > Solar.R & 0.0598 & 0.0232 & 2.58 & 0.0112 \\
    > \hline
    > \end{tabular}
    > \end{center}
    > \end{table}
    48,49c62,77
    < ERROR: unable to run code chunk 3
    < there is no package called 'xtable'
    ---
    > % latex table generated in R 2.12.0 by xtable 1.5-6 package
    > % Mon Apr 12 11:22:33 2010
    > \begin{table}[ht]
    > \begin{center}
    > \begin{tabular}{rrrrr}
    > \hline
    > & Estimate & Std. Error & t value & Pr($>$$|$t$|$) \\
    > \hline
    > (Intercept) & -64.3421 & 23.0547 & -2.79 & 0.0062 \\
    > Temp & 1.6521 & 0.2535 & 6.52 & 0.0000 \\
    > Wind & -3.3336 & 0.6544 & -5.09 & 0.0000 \\
    > Solar.R & 0.0598 & 0.0232 & 2.58 & 0.0112 \\
    > \hline
    > \end{tabular}
    > \end{center}
    > \end{table}
    87,88c115,130
    < ERROR: unable to run code chunk 3
    < there is no package called 'xtable'
    ---
    > % latex table generated in R 2.12.0 by xtable 1.5-6 package
    > % Mon Apr 12 11:22:33 2010
    > \begin{table}[ht]
    > \begin{center}
    > \begin{tabular}{rrrrr}
    > \hline
    > & Estimate & Std. Error & t value & Pr($>$$|$t$|$) \\
    > \hline
    > (Intercept) & -64.3421 & 23.0547 & -2.79 & 0.0062 \\
    > Temp & 1.6521 & 0.2535 & 6.52 & 0.0000 \\
    > Wind & -3.3336 & 0.6544 & -5.09 & 0.0000 \\
    > Solar.R & 0.0598 & 0.0232 & 2.58 & 0.0112 \\
    > \hline
    > \end{tabular}
    > \end{center}
    > \end{table}
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... [1s/1s] OK
  • checking re-building of vignette PDFs ... [2s/3s] OK
  • checking PDF version of manual ... OK
    NOTE: There were 2 notes.
    See
    ‘/home/hornik/tmp/R.check/r-patched/Work/PKGS/SRPM.Rcheck/00check.log’
    for details.