- using R version 3.0.1 Patched (2013-05-16 r62757)
- using platform: x86_64-unknown-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘OligoSpecificitySystem/DESCRIPTION’ ... OK
- this is package ‘OligoSpecificitySystem’ version ‘1.3’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘OligoSpecificitySystem’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
calc2: warning in matrix(nr = 1, nc = 3): partial argument match of
'nr' to 'nrow'
calc2: warning in matrix(nr = 1, nc = 3): partial argument match of
'nc' to 'ncol'
calc3: warning in matrix(nr = 1, nc = 7): partial argument match of
'nr' to 'nrow'
calc3: warning in matrix(nr = 1, nc = 7): partial argument match of
'nc' to 'ncol'
OSS: no visible binding for '<<-' assignment to ‘ONDB1name’
OSS: no visible binding for '<<-' assignment to ‘ONDB2name’
OSS: no visible binding for '<<-' assignment to ‘ONDB3name’
OSS: no visible binding for '<<-' assignment to ‘ONDB4name’
OSS : .write: no visible binding for global variable ‘ONDB1name’
OSS : .write: no visible binding for global variable ‘ONDB2name’
OSS : .write: no visible binding for global variable ‘ONDB3name’
OSS : .write: no visible binding for global variable ‘ONDB4name’
OSS : run: no visible binding for global variable ‘txt’
OSS : example1: no visible binding for '<<-' assignment to ‘ONDB1name’
OSS : example1: no visible binding for global variable ‘fil’
OSS : example1: no visible binding for global variable ‘separator’
OSS : example2: no visible binding for '<<-' assignment to ‘ONDB2name’
OSS : example2: no visible binding for global variable ‘fil’
OSS : example2: no visible binding for global variable ‘separator’
OSS : example3: no visible binding for '<<-' assignment to ‘ONDB3name’
OSS : example3: no visible binding for global variable ‘fil’
OSS : example3: no visible binding for global variable ‘separator’
OSS : reset1: no visible binding for '<<-' assignment to ‘ONDB1name’
OSS : reset2: no visible binding for '<<-' assignment to ‘ONDB2name’
OSS : reset3: no visible binding for '<<-' assignment to ‘ONDB3name’
OSS : reset4: no visible binding for '<<-' assignment to ‘ONDB4name’
OSS : OnOk: no visible binding for global variable ‘Name’
OSS : OnOk: no visible binding for global variable ‘Namenbseq’
OSS : calc: no visible binding for global variable ‘txt4’
OSS : calc: no visible binding for global variable ‘txt3’
OSS : dprim: no visible binding for global variable ‘txt4’
OSS : dprim: no visible binding for global variable ‘txt3’
OSS : effic: no visible binding for global variable ‘txt4’
OSS : effic: no visible binding for global variable ‘txt3’
OSS : impr: no visible binding for global variable ‘txt4’
OSS : impr: no visible binding for global variable ‘txt3’
OSS: no visible binding for '<<-' assignment to ‘Name’
OSS: no visible binding for global variable ‘Name’
OSS: no visible binding for '<<-' assignment to ‘Namenbseq’
OSS: no visible binding for global variable ‘Namenbseq’
OnOk: no visible binding for global variable ‘Name’
OnOk: no visible binding for global variable ‘Namenbseq’
calc2: no visible binding for global variable ‘txt1’
calc2: no visible binding for global variable ‘txt2’
calc3: no visible binding for global variable ‘txt1’
calc3: no visible binding for global variable ‘txt2’
calc3: no visible binding for global variable ‘txt3’
concatenate: no visible binding for global variable ‘txt3’
concatenate: no visible binding for global variable ‘txt4’
concatenate: no visible binding for global variable ‘txt1’
concatenate: no visible binding for global variable ‘txt2’
concatenate : calc: no visible binding for '<<-' assignment to ‘txt1’
concatenate : calc: no visible binding for '<<-' assignment to ‘txt2’
concatenate : calc: no visible binding for '<<-' assignment to ‘txt3’
concatenate : calc: no visible binding for '<<-' assignment to
‘ONDB1name’
concatenate : calc: no visible binding for '<<-' assignment to
‘ONDB2name’
concatenate : calc: no visible binding for '<<-' assignment to
‘ONDB3name’
dbb1: no visible binding for global variable ‘Filters’
dbb1: no visible binding for '<<-' assignment to ‘ONDB1name’
dbb1: no visible binding for global variable ‘separator’
dbb2: no visible binding for global variable ‘Filters’
dbb2: no visible binding for '<<-' assignment to ‘ONDB2name’
dbb2: no visible binding for global variable ‘separator’
dbb3: no visible binding for global variable ‘Filters’
dbb3: no visible binding for '<<-' assignment to ‘ONDB3name’
dbb3: no visible binding for global variable ‘separator’
dbb4: no visible binding for global variable ‘separator’
dbb4: no visible binding for global variable ‘txt1’
dbb4: no visible binding for global variable ‘txt2’
dbb4: no visible binding for global variable ‘txt3’
dbb4: no visible binding for '<<-' assignment to ‘ONDB4name’
degencal2 : temp: no visible binding for global variable ‘nbsequence’
degencal2 : temp: no visible binding for global variable ‘zz1’
degencal3 : temp: no visible binding for global variable ‘nbsequence’
degencal3 : temp: no visible binding for global variable ‘zz1’
degencal4: no visible binding for global variable ‘txt1’
degencal4: no visible binding for global variable ‘txt2’
degencal4: no visible binding for global variable ‘txt3’
degencal4: no visible binding for global variable ‘txt4’
degencal4: no visible binding for global variable ‘nbsequence’
exportglobal: no visible binding for global variable ‘txt1’
exportglobal: no visible binding for global variable ‘txt2’
exportglobal: no visible binding for global variable ‘txt3’
exportglobal: no visible binding for global variable ‘newdb’
glob2d : temp : normal_prct: no visible binding for global variable
‘zz1’
glob2d : temp : normal_prct: no visible binding for global variable
‘nbsequence’
glob2d : temp : normal: no visible binding for global variable ‘zz1’
glob2d : temp: no visible binding for global variable ‘nbsequence’
glob3d : temp : normal: no visible binding for global variable ‘zz1’
glob3d : temp : normal_prct: no visible binding for global variable
‘zz1’
glob3d : temp : normal_prct: no visible binding for global variable
‘nbsequence’
glob3d : temp: no visible binding for global variable ‘nbsequence’
impr2d : temp: no visible binding for global variable ‘nbsequence’
impr2d : temp: no visible binding for global variable ‘zz1’
impr3d : temp: no visible binding for global variable ‘nbsequence’
impr3d : temp: no visible binding for global variable ‘zz1’
optxt: no visible binding for '<<-' assignment to ‘fil’
optxt: no visible binding for global variable ‘bg’
pcrcal2 : temp: no visible binding for global variable ‘zz1’
pcrcal2 : temp : normal_prct: no visible binding for global variable
‘nbsequence’
pcrcal2 : temp: no visible binding for global variable ‘nbsequence’
pcrcal3 : temp: no visible binding for global variable ‘nbsequence’
pcrcal3 : temp: no visible binding for global variable ‘zz1’
pcrcal4: no visible binding for global variable ‘myfiles’
pcrcal4: no visible binding for global variable ‘txt1’
pcrcal4: no visible binding for global variable ‘txt2’
pcrcal4: no visible binding for global variable ‘txt3’
pcrcal4: no visible binding for global variable ‘txt4’
pcrcal4: no visible binding for global variable ‘nbsequence’
security: no visible binding for global variable ‘txt4’
security: no visible binding for global variable ‘txt1’
security: no visible binding for global variable ‘txt2’
security: no visible binding for global variable ‘txt3’
waitGUI: no visible binding for '<<-' assignment to ‘z’
waitGUI: no visible binding for global variable ‘z’
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking examples ... [0s/0s] OK
- checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/home/hornik/tmp/R.check/r-patched-ng/Work/PKGS/OligoSpecificitySystem.Rcheck/00check.log’
for details.