• using R version 2.15.0 Patched (2012-05-19 r59366)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘NCBI2R/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘NCBI2R’ version ‘1.3.5’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘NCBI2R’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  pn : pn.int: warning in scan(myurl, what = "character", sep = "\n",
  nline = 1, quiet = TRUE): partial argument match of 'nline' to
  'nlines'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... ERROR
  Running examples in ‘NCBI2R-Ex.R’ failed
  The error most likely occurred in:
  
  > ### Name: AdjustRangeAroundGene
  > ### Title: Adjusts gene position
  > ### Aliases: AdjustRangeAroundGene
  >
  > ### ** Examples
  >
  > idnumber<-GetIDs("CLN5[SYM] human")
  Warning in compareVersion(URLdef$buildversion, LatestVersion) :
  NAs introduced by coercion
  Error in if (a[k] > b[k]) return(1) else if (a[k] < b[k]) return(-1L) :
  missing value where TRUE/FALSE needed
  Calls: GetIDs ... updateCheckWrapper -> updateCheck.int -> compareVersion
  Execution halted