• using R version 3.0.1 Patched (2013-06-16 r62969)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘MetaPCA/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘MetaPCA’ version ‘0.1.4’
• checking package namespace information ... OK
• checking package dependencies ... NOTE
  Package suggested but not available for checking: ‘doSMP’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘MetaPCA’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  DropDupGenes: no visible global function definition for ‘startWorkers’
  DropDupGenes: no visible global function definition for ‘registerDoSMP’
  DropDupGenes: no visible global function definition for ‘stopWorkers’
  PreprocessMetaAnalysis: no visible binding for global variable ‘dat’
  requireAll: no visible global function definition for ‘biocLite’
• checking Rd files ... NOTE
  prepare_Rd: DropDupGenes.Rd:29-31: Dropping empty section \details
  prepare_Rd: DropDupGenes.Rd:41-43: Dropping empty section \note
  prepare_Rd: DropDupGenes.Rd:47-49: Dropping empty section \seealso
  prepare_Rd: MetaPCA-package.Rd:29-30: Dropping empty section \seealso
  prepare_Rd: MetaPCA.Rd:76-78: Dropping empty section \details
  prepare_Rd: MetaPCA.Rd:88-90: Dropping empty section \note
  prepare_Rd: MetaPCA.Rd:94-96: Dropping empty section \seealso
  prepare_Rd: PlotPC2D.Rd:80-82: Dropping empty section \details
  prepare_Rd: PlotPC2D.Rd:92-94: Dropping empty section \note
  prepare_Rd: PlotPC2D.Rd:98-100: Dropping empty section \seealso
  prepare_Rd: PreprocessMetaAnalysis.Rd:39-41: Dropping empty section \details
  prepare_Rd: PreprocessMetaAnalysis.Rd:51-53: Dropping empty section \note
  prepare_Rd: PreprocessMetaAnalysis.Rd:57-59: Dropping empty section \seealso
  prepare_Rd: requireAll.Rd:19-21: Dropping empty section \details
  prepare_Rd: requireAll.Rd:31-33: Dropping empty section \note
  prepare_Rd: requireAll.Rd:25-27: Dropping empty section \references
  prepare_Rd: requireAll.Rd:37-39: Dropping empty section \seealso
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [0s/0s] OK
• checking PDF version of manual ... OK
  NOTE: There were 3 notes.
  See
  ‘/home/hornik/tmp/R.check/r-patched-ng/Work/PKGS/MetaPCA.Rcheck/00check.log’
  for details.