• using R version 2.15.0 Patched (2012-05-19 r59366)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘IgorR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘IgorR’ version ‘0.5’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘IgorR’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  .ReadUserStr: warning in .readCharsWithEnc(con, strLen, enc =
  ifelse(IgorPlatform == "windows", "WINDOWS-1252", "macintosh")):
  partial argument match of 'enc' to 'encoding'
  ReadAllNclampLogTables: warning in dir(logfiledir, full = T): partial
  argument match of 'full' to 'full.names'
  ReadAllNclampLogTables: warning in assign("logfiles", list(), env =
  .GlobalEnv): partial argument match of 'env' to 'envir'
  SummariseSweepFile: warning in grep("^Chan[A-Z]$", listnames, val = T):
  partial argument match of 'val' to 'value'
  UpdateSweepDataFrame: warning in dir(folder, patt = "_[0-9]+\\.pxp$",
  full = T): partial argument match of 'patt' to 'pattern'
  UpdateSweepDataFrame: warning in dir(folder, patt = "_[0-9]+\\.pxp$",
  full = T): partial argument match of 'full' to 'full.names'
  read.pxp: warning in match.arg(IgorPlatform, choice = c("windows",
  "macintosh")): partial argument match of 'choice' to 'choices'
  ReadAllNclampLogTables: no visible binding for '<<-' assignment to
  ‘logfiles’
  ReadAllNclampLogTables: no visible binding for global variable
  ‘logfiles’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in tests ... OK
• checking tests ... [2s/2s] OK
  Running ‘test-all.R’ [2s/2s]
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-patched/Work/PKGS/IgorR.Rcheck/00check.log’
  for details.