• using R version 2.14.1 Patched (2012-02-07 r58290)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘FAiR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘FAiR’ version ‘0.4-7’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘FAiR’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘FAiR/R/zzz.R’:
  .onAttach calls:
  cat(paste("\n## FAiR Version", version, "Build Date:", BuildDate, "\n"))
  cat("## See http://wiki.r-project.org/rwiki/doku.php?id=packages:cran:fair for more info")
  cat("\nFAiR Copyright (C) 2008 Benjamin King Goodrich\n")
  cat("This program comes with ABSOLUTELY NO WARRANTY.\n")
  cat("This is free software, and you are welcome to redistribute it\n")
  cat("under certain conditions, namely those specified in the LICENSE file\n")
  cat("in the root directory of the source code.\n")
  cat("\n\nWARNING: It appears you are using a Mac.\n", "FAiR will CRASH under normal usage unless the X server is running.\n", "If you are using the R GUI, click the X icon in the top middle ", "region of the GUI and then restart the R GUI.\n", "If you are not using the R GUI, close R, execute 'open -a X11.app' in ", "a shell and then restart R\n", "If you do not have an X server installed, it is very difficult to use ", "FAiR on a Mac; see the OSX installation disc to install it if necessary.")
  cat("\n\n It appears you are using Windows.\n", "It is recommended that you disable buffering by pressing Ctrl-W or\n", "by deselecting Misc -> Buffered output in the menu at the top.\n", "Doing so will consistently print the progress of the genetic algorithm.\n")
  require(jit)
  
  Package startup functions should not change the search path.
  Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
  See section ‘Good practice’ in ?.onAttach.
  
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... WARNING
  Missing link(s) in documentation object ‘/home/hornik/tmp/R.check/r-patched/Work/PKGS/FAiR/man/model_comparison.Rd’:
  ‘[stats4]{BIC}’
  
  See the information in section ‘Cross-references’ of the ‘Writing R
  Extensions’ manual.
  
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking examples ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ... OK
  Running ‘testsCFA.R’
  Running ‘testsEFA.R’
  Running ‘testsMANIFEST.R’
  Running ‘testsMICRO.R’
  Running ‘testsRESTRICTIONS.R’
  Running ‘testsSEFA.R’
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... WARNING
  Unused files in ‘inst/doc’ which are pointless or misleading
  as they will be re-created from the vignettes:
  FAiR.R
  
• checking running R code from vignettes ... OK
• checking re-building of vignette PDFs ... OK
• checking PDF version of manual ... OK
  WARNING: There were 2 warnings, see
  ‘/home/hornik/tmp/R.check/r-patched/Work/PKGS/FAiR.Rcheck/00check.log’
  for details