* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘EpiModel’ ...
** package ‘EpiModel’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpToxlXk/R.INSTALL3d6a24d8a9ce7/EpiModel/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ergm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ergm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c changestats.users.c -o changestats.users.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ergm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c include_stubs.c -o include_stubs.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ergm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c registerDynamicSymbol.cpp -o registerDynamicSymbol.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/ergm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c updatenw.cpp -o updatenw.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o EpiModel.so RcppExports.o changestats.users.o include_stubs.o registerDynamicSymbol.o updatenw.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpToxlXk/R.INSTALL3d6a24d8a9ce7/EpiModel/src'
make[1]: Entering directory '/tmp/RtmpToxlXk/R.INSTALL3d6a24d8a9ce7/EpiModel/src'
make[1]: Leaving directory '/tmp/RtmpToxlXk/R.INSTALL3d6a24d8a9ce7/EpiModel/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-EpiModel/00new/EpiModel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘EpiModel’
finding HTML links ... done
EpiModel-package html
InitErgmTerm.absdiffby html
InitErgmTerm.absdiffnodemix html
InitErgmTerm.fuzzynodematch html
add_vertices html
apportion_lr html
arrivals.2g.net html
arrivals.icm html
arrivals.icm.bip html
arrivals.net html
arrive_nodes html
as.data.frame.dcm html
as.data.frame.icm html
as.data.frame.netdx html
as.network.transmat html
finding level-2 HTML links ... done
as.phylo.transmat html
auto_update_attr html
brewer_ramp html
check_attr_lengths html
check_degdist_bal html
check_end_horizon_control html
color_tea html
common_updater html
comp_plot html
control.dcm html
control.icm html
control.net html
copy_datattr_to_nwattr html
copy_nwattr_to_datattr html
create_dat_object html
create_scenario_list html
crosscheck.dcm html
crosscheck.icm html
crosscheck.net html
dcm html
dcm.mods html
deleteAttr html
delete_attr html
delete_edges html
delete_vertices html
depart_nodes html
departures.2g.net html
departures.icm html
departures.icm.bip html
departures.net html
discord_edgelist html
dissolution_coefs html
edgelist_censor html
edges_correct html
epi_trackers html
epiweb html
format_param html
generate_random_params html
geom_bands html
get_args html
get_attr_history html
get_attr_prop html
get_cumulative_degree html
get_cumulative_edgelist html
get_cumulative_edgelists_df html
get_current_timestep html
get_degree html
get_edgelist html
get_formula_term_attr html
get_modules html
get_network html
get_network_attributes html
get_network_term_attr html
get_nwparam html
get_nwstats html
get_param_set html
get_partners html
get_sims html
get_transmat html
get_vertex_attribute html
icm html
idgroup html
increment_timestep html
infection.2g.net html
infection.icm html
infection.icm.bip html
infection.net html
init.dcm html
init.icm html
init.net html
init_nets html
init_status.icm html
init_status.net html
initialize.icm html
initialize.net html
is_active_posit_ids html
is_active_unique_ids html
make_module_list html
make_stats_table html
mcat html
merge.icm html
merge.netsim html
modules.icm html
modules.net html
multilayer html
mutate_epi html
net-accessor html
netdx html
netest html
netsim html
netsim_cond_msg html
netsim_error_logger html
network_initialize html
nwupdate.net html
padded_vector html
param.dcm html
param.icm html
param.net html
param.net_from_table html
param_random html
plot.dcm html
plot.icm html
plot.netdx html
plot.netsim html
plot.transmat html
prevalence.icm html
prevalence.icm.bip html
prevalence.net html
print.netdx html
print_nwstats_table html
process_out.net html
record_attr_history html
record_raw_object html
recovery.2g.net html
recovery.icm html
recovery.icm.bip html
recovery.net html
reexports html
remove_modules html
resim_nets html
saveout.dcm html
saveout.icm html
saveout.net html
set_current_timestep html
set_modules html
set_network html
set_transmat html
set_vertex_attribute html
sim_nets_t1 html
simulate_dat html
ssample html
summary.dcm html
summary.icm html
summary.netest html
summary.netsim html
summary_nets html
tedgelist_to_toggles html
test_icm html
test_net html
toggles_to_diss_stats html
trigger_end_horizon html
trim_netest html
truncate_sim html
unique_id-tools html
update_cumulative_edgelist html
update_dissolution html
update_list html
update_params html
update_unique_ids html
use_scenario html
verbose.dcm html
verbose.icm html
verbose.net html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (EpiModel)