• using R version 3.0.1 Patched (2013-05-16 r62757)
• using platform: x86_64-unknown-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘BaM/DESCRIPTION’ ... OK
• this is package ‘BaM’ version ‘0.99’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘BaM’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  biv.norm.post: possible error in rwishart(alpha + n, SqrtSigma =
  chol(solve(Wp.inv))): unused argument (SqrtSigma =
  chol(solve(Wp.inv)))
  biv.norm.post: no visible global function definition for ‘rmultinorm’
  mhplot.walk.MH: possible error in mhplot(walk.mat[1, 1], walk.mat[1,
  2], type = "n", xlim = round(range(walk.mat[, 1]) * 1.2), ylim =
  round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab = ""): unused
  arguments (walk.mat[1, 2], type = "n", xlim = round(range(walk.mat[,
  1]) * 1.2), ylim = round(range(walk.mat[, 2]) * 1.2), xlab = "", ylab
  = "")
  sir: no visible binding for global variable ‘normal.posterior.ll’
  sir: no visible binding for global variable ‘t.posterior.ll’
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [1s/1s] OK
• checking PDF version of manual ... OK
  NOTE: There was 1 note.
  See
  ‘/home/hornik/tmp/R.check/r-patched-ng/Work/PKGS/BaM.Rcheck/00check.log’
  for details.