• using R version 2.7.1 Patched (2008-06-26 r45997)
• using session charset: UTF-8
• checking for file 'BMA/DESCRIPTION' ... OK
• this is package 'BMA' version '3.03'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'BMA' can be installed ... WARNING
  Found the following significant warnings:
  Warning: Extension: REAL array index at (1)
  Warning: Extension: REAL array index at (1)
  See http://www.r-project.org/nosvn/R.check/r-patched-linux-x86_64/BMA-00install.html for details.
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  bicreg: no visible binding for global variable ‘w’
  glib.bic.glm: no visible binding for global variable ‘NUL’
  iBMA.glm.data.frame : sortX: no visible binding for '<<-' assignment to
  ‘nastyHack_____glm.family’
  iBMA.glm.data.frame : sortX: no visible binding for '<<-' assignment to
  ‘nastyHack_____x.df’
  iBMA.glm.data.frame : sortX: no visible binding for global variable
  ‘nastyHack_____glm.family’
  iBMA.glm.data.frame : sortX: no visible binding for global variable
  ‘nastyHack_____x.df’
  iBMA.glm.matrix : sortX: no visible binding for '<<-' assignment to
  ‘nastyHack_____glm.family’
  iBMA.glm.matrix : sortX: no visible binding for '<<-' assignment to
  ‘nastyHack_____x.df’
  iBMA.glm.matrix : sortX: no visible binding for global variable
  ‘nastyHack_____glm.family’
  iBMA.glm.matrix : sortX: no visible binding for global variable
  ‘nastyHack_____x.df’
  iBMA.surv.data.frame : sortX: no visible binding for '<<-' assignment
  to ‘nastyHack_____x.df’
  iBMA.surv.data.frame : sortX: no visible binding for global variable
  ‘nastyHack_____x.df’
  iBMA.surv.matrix : sortX: no visible binding for '<<-' assignment to
  ‘nastyHack_____x.df’
  iBMA.surv.matrix : sortX: no visible binding for global variable
  ‘nastyHack_____x.df’
• checking Rd files ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... WARNING
  Functions/methods with usage in documentation object 'as.data.frame.mc3' but not in code:
  [
  
• checking Rd \usage sections ... WARNING
  Objects in \usage without \alias in documentation object 'as.data.frame.mc3':
  [
  
  Functions with \usage entries need to have the appropriate \alias entries,
  and all their arguments documented.
  The \usage entries must correspond to syntactically valid R code.
  See the chapter 'Writing R documentation files' in manual 'Writing R
  Extensions'.
  S3 methods shown with full name in documentation object 'as.data.frame.mc3':
  as.data.frame.mc3
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter 'Writing R documentation files' in manual 'Writing R
  Extensions'.
• checking data for non-ASCII characters ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $BLAS_LIBS ... OK
• creating BMA-Ex.R ... OK
• checking examples ... OK
• creating BMA-manual.tex ... OK
• checking BMA-manual.tex using pdflatex ... OK