• using R version 2.10.1 Patched (2010-02-01 r51089)
  • using session charset: UTF-8
  • checking for file 'vabayelMix/DESCRIPTION' ... OK
  • checking extension type ... Package
  • this is package 'vabayelMix' version '0.3'
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking whether package 'vabayelMix' can be installed ... WARNING
    Found the following significant warnings:
    Warning: ./man/CostKL.Rd:30: unknown macro '\item'
    Warning: ./man/CostKL.Rd:35: unknown macro '\item'
    Warning: ./man/CostKL.Rd:37: unknown macro '\item'
    Warning: ./man/MembProbFn2.Rd:28: unknown macro '\item'
    Warning: ./man/MembProbFn2.Rd:33: unknown macro '\item'
    Warning: ./man/MembProbFn2.Rd:35: unknown macro '\item'
    Warning: ./man/UpdateCatw.Rd:20: unknown macro '\item'
    Warning: ./man/UpdateCatw.Rd:25: unknown macro '\item'
    Warning: ./man/UpdateCatw.Rd:27: unknown macro '\item'
    Warning: ./man/UpdateMix.Rd:27: unknown macro '\item'
    Warning: ./man/UpdateMix.Rd:32: unknown macro '\item'
    Warning: ./man/UpdateMix.Rd:34: unknown macro '\item'
    Warning: ./man/UseBasicPrior.Rd:32: unknown macro '\item'
    Warning: ./man/UseBasicPrior.Rd:37: unknown macro '\item'
    Warning: ./man/UseBasicPrior.Rd:39: unknown macro '\item'
    Warning: ./man/vabayelMix.Rd:54: unknown macro '\item'
    Warning: ./man/vabayelMix.Rd:56: unknown macro '\item'
    Warning: ./man/vabayelMix.Rd:58: unknown macro '\item'
    Warning: ./man/vabayelMix.Rd:60: unknown macro '\item'
    Warning: ./man/vabayelMix.Rd:76: unknown macro '\item'
    Warning: ./man/vabayelMix.Rd:81: unknown macro '\item'
    Warning: ./man/vabayelMix.Rd:83: unknown macro '\item'
    See http://www.r-project.org/nosvn/R.check/r-patched-linux-ix86/vabayelMix-00install.html for details.
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... NOTE
    Non-standard license specification:
    GPL version 2 or newer
    Standardizable: TRUE
    Standardized license specification:
    GPL (>= 2)
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    CostKL: no visible binding for '<<-' assignment to ‘sum1’
    CostKL: no visible binding for '<<-' assignment to ‘sum2’
    CostKL: no visible binding for '<<-' assignment to ‘sum3’
    CostKL: no visible binding for '<<-' assignment to ‘sum4’
    CostKL: no visible binding for '<<-' assignment to ‘sum5’
    CostKL: no visible binding for '<<-' assignment to ‘sum6’
    CostKL: no visible binding for '<<-' assignment to ‘sum7’
    CostKL: no visible binding for '<<-' assignment to ‘sum8’
    CostKL: no visible binding for global variable ‘sum1’
    CostKL: no visible binding for global variable ‘sum2’
    CostKL: no visible binding for global variable ‘sum3’
    CostKL: no visible binding for global variable ‘sum4’
    CostKL: no visible binding for global variable ‘sum5’
    CostKL: no visible binding for global variable ‘sum6’
    CostKL: no visible binding for global variable ‘sum7’
    CostKL: no visible binding for global variable ‘sum8’
    Found possibly global 'T' or 'F' in the following functions:
    pack unbiasedKurt
  • checking Rd files ... WARNING
    prepare_Rd: CostKL.Rd:30: unknown macro '\item'
    prepare_Rd: CostKL.Rd:35: unknown macro '\item'
    prepare_Rd: CostKL.Rd:37: unknown macro '\item'
    prepare_Rd: MembProbFn2.Rd:28: unknown macro '\item'
    prepare_Rd: MembProbFn2.Rd:33: unknown macro '\item'
    prepare_Rd: MembProbFn2.Rd:35: unknown macro '\item'
    prepare_Rd: UpdateCatw.Rd:20: unknown macro '\item'
    prepare_Rd: UpdateCatw.Rd:25: unknown macro '\item'
    prepare_Rd: UpdateCatw.Rd:27: unknown macro '\item'
    prepare_Rd: UpdateMix.Rd:27: unknown macro '\item'
    prepare_Rd: UpdateMix.Rd:32: unknown macro '\item'
    prepare_Rd: UpdateMix.Rd:34: unknown macro '\item'
    prepare_Rd: UseBasicPrior.Rd:32: unknown macro '\item'
    prepare_Rd: UseBasicPrior.Rd:37: unknown macro '\item'
    prepare_Rd: UseBasicPrior.Rd:39: unknown macro '\item'
    prepare_Rd: vabayelMix.Rd:54: unknown macro '\item'
    prepare_Rd: vabayelMix.Rd:56: unknown macro '\item'
    prepare_Rd: vabayelMix.Rd:58: unknown macro '\item'
    prepare_Rd: vabayelMix.Rd:60: unknown macro '\item'
    prepare_Rd: vabayelMix.Rd:76: unknown macro '\item'
    prepare_Rd: vabayelMix.Rd:81: unknown macro '\item'
    prepare_Rd: vabayelMix.Rd:83: unknown macro '\item'
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking examples ... OK
  • checking PDF version of manual ... OK