• using R version 2.10.1 Patched (2010-02-01 r51089)
  • using session charset: UTF-8
  • checking for file 'tossm/DESCRIPTION' ... OK
  • checking extension type ... Package
  • this is package 'tossm' version '1.3'
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking whether package 'tossm' can be installed ... WARNING
    Found the following significant warnings:
    Warning: Deleted feature: End expression in DO loop at (1) must be integer
    See http://www.r-project.org/nosvn/R.check/r-patched-linux-ix86/tossm-00install.html for details.
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    adjust.pop.dyn: no visible global function definition for ‘find.root’
    agg.gs.series: no visible binding for global variable ‘gs’
    agg.gs.tseries: no visible binding for global variable ‘gs’
    breed.grow.die: no visible binding for global variable ‘n.stages’
    breed.grow.die: no visible binding for global variable ‘n.bg’
    breed.grow.die: no visible binding for global variable ‘K’
    breed.grow.die: no visible binding for global variable ‘ttmat0’
    breed.grow.die: no visible binding for global variable ‘ttmatK’
    breed.grow.die: no visible binding for global variable ‘mm’
    breed.grow.die: no visible binding for global variable ‘R0’
    breed.grow.die: no visible binding for global variable ‘RK’
    breed.grow.die: no visible binding for global variable ‘M0’
    breed.grow.die: no visible binding for global variable ‘ma.al1’
    breed.grow.die: no visible binding for global variable ‘n.ma.als’
    breed.grow.die: no visible binding for global variable ‘ma.al2’
    breed.grow.die: no visible binding for global variable ‘pa.al1’
    breed.grow.die: no visible binding for global variable ‘n.pa.als’
    breed.grow.die: no visible binding for global variable ‘pa.al2’
    count.alleles.by.f: no visible binding for global variable ‘agg.gs’
    count.alleles.by.f: no visible binding for global variable ‘n.alleles’
    count.alleles.by.f: no visible binding for global variable ‘n.areas’
    count.alleles.by.f: no visible binding for global variable ‘n.loci’
    get.SRM: no visible binding for global variable ‘n.epoch’
    hyptest.network.BSA: no visible binding for global variable
    ‘agg.gtypes’
    hyptest.network.BSA: no visible binding for global variable ‘edges’
    hyptest.seq.BSA: no visible binding for global variable ‘n.areas’
    hyptest.seq.BSA: no visible binding for global variable ‘n.loci’
    hyptest.seq.BSA: no visible binding for global variable ‘maxal’
    hyptest.seq.BSA: no visible binding for global variable ‘agg.gfreq’
    km.simple.demo: no visible global function definition for
    ‘new.local.demo’
    km.simple.demo: no visible global function definition for ‘new.epoch’
    km.simple.demo: no visible global function definition for ‘new.locus’
    old.bgd: no visible binding for global variable ‘n.stages’
    old.bgd: no visible binding for global variable ‘n.bg’
    old.bgd: no visible binding for global variable ‘DD’
    old.bgd: no visible binding for global variable ‘K’
    old.bgd: no visible binding for global variable ‘S’
    old.bgd: no visible binding for global variable ‘mm’
    old.bgd: no visible binding for global variable ‘R’
    old.bgd: no visible binding for global variable ‘M’
    old.bgd: no visible binding for global variable ‘ma.al1’
    old.bgd: no visible binding for global variable ‘n.ma.als’
    old.bgd: no visible binding for global variable ‘ma.al2’
    old.bgd: no visible binding for global variable ‘pa.al1’
    old.bgd: no visible binding for global variable ‘n.pa.als’
    old.bgd: no visible binding for global variable ‘pa.al2’
    prepare.rland: no visible binding for global variable ‘S0’
    prepare.rland: no visible binding for global variable ‘SK’
    prepare.rland: no visible binding for global variable ‘ma’
    prepare.rland: no visible binding for global variable ‘pa’
    print.tossm.obj: no visible binding for global variable ‘abund.b’
    print.tossm.obj: no visible binding for global variable ‘abund.f’
    print.tossm.obj: no visible binding for global variable ‘catches’
    print.tossm.obj: no visible binding for global variable ‘effort’
    print.tossm.obj: no visible binding for global variable ‘FIMA.mu.map’
    run.tossm: no visible binding for global variable ‘CV’
    run.tossm: no visible binding for global variable ‘est’
    run.tossm: no visible binding for global variable ‘agg.gs’
    run.tossm: no visible binding for global variable ‘agg.gtypes’
    structure.BSA: no visible binding for global variable ‘agg.gtypes’
    structure.BSA: no visible binding for global variable ‘output.dir’
    structure.BSA: no visible binding for global variable ‘struct.outfile’
    structure.BSA: no visible binding for global variable ‘k’
    structure.BSA: no visible binding for global variable ‘agg.gs’
    structure.BSA : <anonymous>: no visible binding for global variable
    ‘agg.gs’
    wombsoft.BSA: no visible binding for global variable ‘nb_x’
    wombsoft.BSA: no visible binding for global variable ‘nb_y’
    wombsoft.BSA: no visible binding for global variable ‘m’
    wombsoft.BSA: no visible binding for global variable ‘WCh’
    wombsoft.BSA: no visible binding for global variable ‘CBh’
    wombsoft.BSA: no visible binding for global variable ‘pB’
    wombsoft.BSA: no visible binding for global variable ‘sig.level’
    wombsoft.BSA: no visible binding for global variable ‘min.MU.size’
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... WARNING
    Unknown package(s) ‘<rmetasim>’, ‘<gpclib>’ in Rd xrefs
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking data for non-ASCII characters ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable use of $BLAS_LIBS ... OK
  • checking examples ... OK
  • checking PDF version of manual ... OK