• using R version 2.14.2 RC (2012-02-23 r58468)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘splus2R/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘splus2R’ version ‘1.1-0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking whether package ‘splus2R’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘splus2R/R/splus2R_pkg.R’:
  .onLoad calls:
  require("methods")
  
  Package startup functions should not change the search path.
  See section ‘Good practice’ in ?.onAttach.
  
  peaks: warning in embed(rev(as.vector(x)), dim = span): partial
  argument match of 'dim' to 'dimension'
  rmvnorm: warning in eigen(cov, sym = TRUE): partial argument match of
  'sym' to 'symmetric'
  signalSeries: warning in numericSequence(from = from, length = len, by
  = by): partial argument match of 'length' to 'length.'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'is.numeric.atomic.vector':
  ‘is.numeric.atomic.vector’
  
  S3 methods shown with full name in documentation object 'subscript2d':
  ‘subscript2d.matrix’ ‘subscript2d.data.frame’
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter ‘Writing R documentation files’ in the ‘Writing R
  Extensions’ manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... OK
• checking for unstated dependencies in tests ... OK
• checking tests ... OK
  Running ‘showStructure.R’
  Comparing ‘showStructure.Rout’ to ‘showStructure.Rout.save’ ...27c27
  < @.Data numeric[ length 5] S3 class: factor
  ---
  > $a numeric[ length 5] S3 class: factor
  29c29
  < @names numeric[ length 5] S3 class: factor
  ---
  > $b numeric[ length 5] S3 class: factor
  31c31
  < @row.names numeric[ length 5] S3 class: factor
  ---
  > $c numeric[ length 5] S3 class: factor
  55c55
  < @.Data numeric[ length 5] S3 class: factor
  ---
  > $a numeric[ length 5] S3 class: factor
  57c57
  < @names numeric[ length 5] S3 class: factor
  ---
  > $b numeric[ length 5] S3 class: factor
  59c59
  < @row.names numeric[ length 5] S3 class: factor
  ---
  > $c numeric[ length 5] S3 class: factor
  Running ‘test1.R’
  Running ‘test2.R’
• checking PDF version of manual ... OK