• using R version 2.10.0 Patched (2009-11-05 r50317)
• using session charset: UTF-8
• checking for file 'simba/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'simba' version '0.2-5'
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking whether package 'simba' can be installed ... WARNING
  Found the following significant warnings:
  Warning: ./man/sim.yo.Rd:57: unexpected '}'
  Warning: ./man/simba-package.Rd:48: unexpected '}'
  See http://www.r-project.org/nosvn/R.check/r-patched-linux-ix86/simba-00install.html for details.
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... NOTE
  Non-standard license specification:
  GPL version 2
  Standardizable: TRUE
  Standardized license specification:
  GPL-2
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  occ.time: no visible binding for global variable ‘listin’
  plot.diffmich: no visible binding for global variable ‘perm’
  plot.dmn: no visible binding for global variable ‘perm’
  sim.yo: no visible binding for global variable ‘METHODS’
  simn : sia: no visible binding for global variable ‘x’
  Found possibly global 'T' or 'F' in the following function:
  plot.dmn
• checking Rd files ... WARNING
  prepare_Rd: aslopect.Rd:34-35: Dropping empty section \seealso
  prepare_Rd: dfcor.Rd:54-56: Dropping empty section \examples
  prepare_Rd: diffmich.Rd:46-48: Dropping empty section \examples
  prepare_Rd: makead.Rd:54: Dropping empty section \seealso
  prepare_Rd: occ.time.Rd:51-53: Dropping empty section \examples
  prepare_Rd: sim.pat.Rd:57-59: Dropping empty section \examples
  prepare_Rd: sim.relt.Rd:66-68: Dropping empty section \examples
  prepare_Rd: sim.tmp.Rd:42-44: Dropping empty section \examples
  prepare_Rd: sim.yo.Rd:57: unexpected '}'
  prepare_Rd: simba-package.Rd:48: unexpected '}'
• checking Rd metadata ... OK
• checking Rd cross-references ... WARNING
  Missing link(s) in documentation object './man/dist.tmp.Rd':
  ‘[base]{dist}’
  
  Missing link(s) in documentation object './man/mama.Rd':
  ‘[base]{reshape}’
  
  Missing link(s) in documentation object './man/pcol.Rd':
  ‘[vegan]{mantell}’
  
  Missing link(s) in documentation object './man/sim.Rd':
  ‘[simba]{coord}’
  
  Missing link(s) in documentation object './man/sim.yo.Rd':
  ‘[simba]{coord}’ ‘[stats]{sim}’
  
  Missing link(s) in documentation object './man/simba-package.Rd':
  ‘[base]{cor.test}’
  
  See the information in section 'Cross-references' of the 'Writing R
  Extensions' manual.
  
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... NOTE
  S3 methods shown with full name in documentation object 'plot.mrpp':
  plot.mrpp
  
  The \usage entries for S3 methods should use the \method markup and not
  their full name.
  See the chapter 'Writing R documentation files' in manual 'Writing R
  Extensions'.
• checking data for non-ASCII characters ... OK
• checking examples ... OK
• checking PDF version of manual ... OK