- using R version 2.14.1 Patched (2012-02-05 r58287)
- using platform: i686-pc-linux-gnu (32-bit)
- using session charset: UTF-8
- checking for file ‘rrcov/DESCRIPTION’ ... OK
- this is package ‘rrcov’ version ‘1.3-01’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘rrcov’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
File ‘rrcov/R/zzz.R’:
.onLoad calls:
require("methods")
cat(paste(title, " (version ", ver, ")\n", sep = ""))
Package startup functions should not change the search path.
Package startup functions should use ‘packageStartupMessage’ to
generate messages.
See section ‘Good practice’ in ?.onAttach.
..covSBic: warning in determinant(cov, log = FALSE): partial argument
match of 'log' to 'logarithm'
..covSRocke: warning in determinant(cov, log = FALSE): partial argument
match of 'log' to 'logarithm'
CovMest: warning in determinant(mest$s, log = FALSE): partial argument
match of 'log' to 'logarithm'
CovMve: warning in determinant(xcov$cov, log = TRUE): partial argument
match of 'log' to 'logarithm'
covMest: warning in determinant(mest$s, log = FALSE): partial argument
match of 'log' to 'logarithm'
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking for portable compilation flags in Makevars ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking compiled code ... NOTE
File ‘/home/hornik/tmp/R.check/r-patched/Work/build/Packages/rrcov/libs/rrcov.so’:
Found ‘_gfortran_stop_string’, possibly from ‘stop’ (Fortran)
Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console. The detected symbols
are linked into the code but might come from libraries and not actually
be called.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
- checking sizes of PDF files under ‘inst/doc’ ... NOTE
‘qpdf’ made some significant size reductions:
compacted ‘rrcov.pdf’ from 584Kb to 449Kb
consider running tools::compactPDF() on these files
- checking examples ... OK
- checking for unstated dependencies in tests ... OK
- checking tests ... OK
Running ‘thubert.R’
Comparing ‘thubert.Rout’ to ‘thubert.Rout.save’ ...1194,1268c1194,1268
< 1 31.105415 -4.714217 10.4566165
< 2 31.707650 -5.748724 10.7682402
< 3 33.366131 -4.625897 12.1570167
< 4 34.173377 -6.069657 12.4466895
< 5 33.780418 -5.508823 11.9872893
< 6 32.493478 -4.684595 10.5679819
< 7 32.592637 -5.235522 10.3765493
< 8 31.293363 -4.865797 10.9379676
< 9 33.160964 -5.714260 12.3098920
< 10 31.919786 -5.384537 12.3374332
< 11 38.231962 -6.810641 13.5994385
< 12 39.290479 -5.393906 15.2942554
< 13 39.418445 -7.326461 11.5194898
< 14 43.906584 -13.214819 8.3282743
< 15 1.906326 0.716061 -0.8635112
< 16 0.263255 0.926016 -1.9009292
< 17 -1.776489 -1.072332 -0.5496140
< 18 0.464648 0.702441 0.0482897
< 19 0.267826 -1.283779 -0.2925812
< 20 2.122108 0.165970 -0.8924686
< 21 0.937217 0.548532 -0.4132196
< 22 0.423273 -1.781869 -0.0323061
< 23 0.047532 0.018909 -1.1259327
< 24 -0.490041 -0.520202 -1.1065753
< 25 -2.143049 0.720869 -0.0495474
< 26 1.094748 -1.459175 0.2226246
< 27 2.070705 0.898573 0.0023229
< 28 -0.294998 0.830258 0.5929001
< 29 -1.242995 0.300216 -0.2010507
< 30 0.147958 0.439099 2.0003038
< 31 0.170818 1.440946 -0.9755627
< 32 -0.958531 -1.199730 -1.0129867
< 33 0.697307 -0.874343 -0.7260649
< 34 -2.278946 0.261106 0.4196544
< 35 1.962829 0.809318 0.2033113
< 36 0.626631 -0.600666 0.8004036
< 37 0.550885 -1.881448 0.7382776
< 38 -1.249717 0.336214 -0.9349845
< 39 -1.106696 1.569418 0.1869576
< 40 -0.684034 -0.939963 -0.1034965
< 41 1.559314 1.551408 0.3660323
< 42 -0.538741 -0.447358 1.6361099
< 43 -0.252685 -2.080564 -0.7765259
< 44 0.217012 1.027281 1.7015154
< 45 -1.497600 1.349234 -0.2698932
< 46 0.100388 1.026443 1.5390401
< 47 -0.811117 2.195271 -0.5208141
< 48 1.462210 1.321318 0.5600144
< 49 1.383976 0.740714 -0.7348906
< 50 1.636773 -0.215464 0.3195369
< 51 -0.530918 0.759743 -1.2069247
< 52 -0.109566 2.107455 -0.5315473
< 53 -0.564334 -0.060847 2.3910630
< 54 -0.272234 -1.122711 -1.5060028
< 55 -0.608660 -1.197219 -0.5255609
< 56 0.565430 -0.710345 -1.3708230
< 57 -1.115629 0.888816 -0.4186014
< 58 1.351288 -0.374815 -1.1980618
< 59 0.998016 -0.151228 0.9007970
< 60 0.124017 -0.764846 1.9005963
< 61 1.189858 -1.905264 0.7721322
< 62 -2.190589 0.579614 -0.1377914
< 63 -0.518278 -0.931130 -1.4534768
< 64 2.124566 0.194391 -0.0327092
< 65 0.154218 1.050861 1.1309885
< 66 -1.197852 -1.044147 -0.2265269
< 67 -0.114174 -0.094763 -0.5168926
< 68 -2.201115 0.032271 0.8573493
< 69 -1.307843 1.104815 -0.7741270
< 70 0.691449 -0.676665 1.0004603
< 71 1.150975 0.050861 -0.0717068
< 72 -0.457293 -0.861871 0.1026350
< 73 -0.392258 -0.897451 0.9178065
< 74 -0.584658 -1.450471 0.3201857
< 75 -0.972517 -0.063777 1.8223995
---
> 1 31.105415 -4.714217 -10.4566165
> 2 31.707650 -5.748724 -10.7682402
> 3 33.366131 -4.625897 -12.1570167
> 4 34.173377 -6.069657 -12.4466895
> 5 33.780418 -5.508823 -11.9872893
> 6 32.493478 -4.684595 -10.5679819
> 7 32.592637 -5.235522 -10.3765493
> 8 31.293363 -4.865797 -10.9379676
> 9 33.160964 -5.714260 -12.3098920
> 10 31.919786 -5.384537 -12.3374332
> 11 38.231962 -6.810641 -13.5994385
> 12 39.290479 -5.393906 -15.2942554
> 13 39.418445 -7.326461 -11.5194898
> 14 43.906584 -13.214819 -8.3282743
> 15 1.906326 0.716061 0.8635112
> 16 0.263255 0.926016 1.9009292
> 17 -1.776489 -1.072332 0.5496140
> 18 0.464648 0.702441 -0.0482897
> 19 0.267826 -1.283779 0.2925812
> 20 2.122108 0.165970 0.8924686
> 21 0.937217 0.548532 0.4132196
> 22 0.423273 -1.781869 0.0323061
> 23 0.047532 0.018909 1.1259327
> 24 -0.490041 -0.520202 1.1065753
> 25 -2.143049 0.720869 0.0495474
> 26 1.094748 -1.459175 -0.2226246
> 27 2.070705 0.898573 -0.0023229
> 28 -0.294998 0.830258 -0.5929001
> 29 -1.242995 0.300216 0.2010507
> 30 0.147958 0.439099 -2.0003038
> 31 0.170818 1.440946 0.9755627
> 32 -0.958531 -1.199730 1.0129867
> 33 0.697307 -0.874343 0.7260649
> 34 -2.278946 0.261106 -0.4196544
> 35 1.962829 0.809318 -0.2033113
> 36 0.626631 -0.600666 -0.8004036
> 37 0.550885 -1.881448 -0.7382776
> 38 -1.249717 0.336214 0.9349845
> 39 -1.106696 1.569418 -0.1869576
> 40 -0.684034 -0.939963 0.1034965
> 41 1.559314 1.551408 -0.3660323
> 42 -0.538741 -0.447358 -1.6361099
> 43 -0.252685 -2.080564 0.7765259
> 44 0.217012 1.027281 -1.7015154
> 45 -1.497600 1.349234 0.2698932
> 46 0.100388 1.026443 -1.5390401
> 47 -0.811117 2.195271 0.5208141
> 48 1.462210 1.321318 -0.5600144
> 49 1.383976 0.740714 0.7348906
> 50 1.636773 -0.215464 -0.3195369
> 51 -0.530918 0.759743 1.2069247
> 52 -0.109566 2.107455 0.5315473
> 53 -0.564334 -0.060847 -2.3910630
> 54 -0.272234 -1.122711 1.5060028
> 55 -0.608660 -1.197219 0.5255609
> 56 0.565430 -0.710345 1.3708230
> 57 -1.115629 0.888816 0.4186014
> 58 1.351288 -0.374815 1.1980618
> 59 0.998016 -0.151228 -0.9007970
> 60 0.124017 -0.764846 -1.9005963
> 61 1.189858 -1.905264 -0.7721322
> 62 -2.190589 0.579614 0.1377914
> 63 -0.518278 -0.931130 1.4534768
> 64 2.124566 0.194391 0.0327092
> 65 0.154218 1.050861 -1.1309885
> 66 -1.197852 -1.044147 0.2265269
> 67 -0.114174 -0.094763 0.5168926
> 68 -2.201115 0.032271 -0.8573493
> 69 -1.307843 1.104815 0.7741270
> 70 0.691449 -0.676665 -1.0004603
> 71 1.150975 0.050861 0.0717068
> 72 -0.457293 -0.861871 -0.1026350
> 73 -0.392258 -0.897451 -0.9178065
> 74 -0.584658 -1.450471 -0.3201857
> 75 -0.972517 -0.063777 -1.8223995
1278,1280c1278,1280
< [1,] 0.51805 0.7683642 -0.37581
< [2,] 0.62577 -0.6399992 -0.44588
< [3,] 0.58312 0.0041858 0.81238
---
> [1,] 0.51805 0.7683642 0.37581
> [2,] 0.62577 -0.6399992 0.44588
> [3,] 0.58312 0.0041858 -0.81238
1543,1546c1543,1546
< [1,] -0.4326888 0.086058
< [2,] -0.6275437 0.227680
< [3,] 0.6472465 0.269032
< [4,] 0.0064233 0.931868
---
> [1,] -0.4326888 -0.086058
> [2,] -0.6275437 -0.227680
> [3,] 0.6472465 -0.269032
> [4,] 0.0064233 -0.931868
1553c1553
< [1] 2.1725 1.1006
---
> [1] 2.2578 1.0667
1557,1560c1557,1560
< [1,] 0.64756 0.086967
< [2,] 0.56924 0.337528
< [3,] -0.34363 0.919561
< [4,] 0.37222 0.181438
---
> [1,] 0.44401 -0.0093574
> [2,] 0.61072 0.4064696
> [3,] -0.62867 0.1201164
> [4,] -0.18613 0.9056859
1561a1562,1576
> Warning messages:
> 1: In center(x) : This function (pcaPP::l1median)is outdated.
>
>
> For better performance try any of pcaPP::l1median_* instead. Preferably pcaPP::l1median_HoCrJo.
>
>
> Otherwise use (trace = -1) for suppressing this warning.
> 2: In center(x) : This function (pcaPP::l1median)is outdated.
>
>
> For better performance try any of pcaPP::l1median_* instead. Preferably pcaPP::l1median_HoCrJo.
>
>
> Otherwise use (trace = -1) for suppressing this warning.
Running ‘tlda.R’
Comparing ‘tlda.Rout’ to ‘tlda.Rout.save’ ... OK
Running ‘tldapp.R’
Comparing ‘tldapp.Rout’ to ‘tldapp.Rout.save’ ... OK
Running ‘tmcd4.R’
Comparing ‘tmcd4.Rout’ to ‘tmcd4.Rout.save’ ... OK
Running ‘tmest.R’
Comparing ‘tmest.Rout’ to ‘tmest.Rout.save’ ... OK
Running ‘tmest4.R’
Comparing ‘tmest4.Rout’ to ‘tmest4.Rout.save’ ... OK
Running ‘tmve4.R’
Comparing ‘tmve4.Rout’ to ‘tmve4.Rout.save’ ... OK
Running ‘togk4.R’
Comparing ‘togk4.Rout’ to ‘togk4.Rout.save’ ... OK
Running ‘tqda.R’
Comparing ‘tqda.Rout’ to ‘tqda.Rout.save’ ... OK
Running ‘tsde.R’
Comparing ‘tsde.Rout’ to ‘tsde.Rout.save’ ... OK
Running ‘tsest.R’
Comparing ‘tsest.Rout’ to ‘tsest.Rout.save’ ... OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... OK
- checking re-building of vignette PDFs ... OK
- checking PDF version of manual ... OK