• using R version 2.14.1 Patched (2012-02-04 r58267)
  • using platform: i686-pc-linux-gnu (32-bit)
  • using session charset: UTF-8
  • checking for file ‘rgenoud/DESCRIPTION’ ... OK
  • this is package ‘rgenoud’ version ‘5.7-3’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking whether package ‘rgenoud’ can be installed ... OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking for unstated dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... NOTE
    File ‘rgenoud/R/zzz.R’:
    .onAttach calls:
    cat(paste("## rgenoud (Version ", version, ", Build Date: ", BuildDate, ")\n", sep = ""))
    cat("## See http://sekhon.berkeley.edu/rgenoud for additional documentation.\n")

    Package startup functions should use ‘packageStartupMessage’ to
    generate messages.
    See section ‘Good practice’ in ?.onAttach.

    .onAttach: warning in packageDescription("rgenoud", lib = rgenoudLib):
    partial argument match of 'lib' to 'lib.loc'
    genoud : gr: warning in assign("x", par, env = genoud.wrapper101.env):
    partial argument match of 'env' to 'envir'
    genoud : gr: warning in assign("helper", helper, env =
    genoud.wrapper101.env): partial argument match of 'env' to 'envir'
    genoud : gr: warning in assign("FiniteBadFitValue", FiniteBadFitValue,
    env = genoud.wrapper101.env): partial argument match of 'env' to
    'envir'
    genoud : fnLexicalSort: no visible binding for global variable ‘indx’
    genoud: multiple local function definitions for ‘fn1.bfgs’ with
    different formal arguments
    genoud: multiple local function definitions for ‘gr1’ with different
    formal arguments
    genoud: multiple local function definitions for ‘hess.fn’ with
    different formal arguments
    genoud_transform : gr: warning in assign("x", par, env =
    genoud.wrapper101.env): partial argument match of 'env' to 'envir'
    genoud_transform : gr: warning in assign("helper", helper, env =
    genoud.wrapper101.env): partial argument match of 'env' to 'envir'
    genoud_transform : gr: warning in assign("FiniteBadFitValue",
    FiniteBadFitValue, env = genoud.wrapper101.env): partial argument
    match of 'env' to 'envir'
    genoud_transform : fnLexicalSort: no visible binding for global
    variable ‘indx’
    genoud_transform: multiple local function definitions for ‘fn1.bfgs’
    with different formal arguments
    genoud_transform: multiple local function definitions for ‘gr1’ with
    different formal arguments
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking compiled code ... NOTE
    File ‘/home/hornik/tmp/R.check/r-patched/Work/build/Packages/rgenoud/libs/rgenoud.so’:
    Found ‘exit’, possibly from ‘exit’ (C)
    Found ‘printf’, possibly from ‘printf’ (C)
    Found ‘putchar’, possibly from ‘putchar’ (C)
    Found ‘puts’, possibly from ‘printf’ (C), ‘puts’ (C)
    Found ‘stderr’, possibly from ‘stderr’ (C)
    Found ‘stdout’, possibly from ‘stdout’ (C)

    Compiled code should not call functions which might terminate R nor
    write to stdout/stderr instead of to the console. The detected symbols
    are linked into the code but might come from libraries and not actually
    be called.

    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking examples ... OK
  • checking for unstated dependencies in tests ... OK
  • checking tests ... OK
    Running ‘tests.R’
    Comparing ‘tests.Rout’ to ‘tests.Rout.save’ ...11c11
    < Mon Feb 6 02:33:32 2012
    ---
    > Wed May 4 00:50:43 2011
    69,71c69,71
    < mean............ 6.096275e-01
    < variance........ 4.272226e-01
    < #unique......... 405, #Total UniqueCount: 2725
    ---
    > mean............ 6.189650e-01
    > variance........ 4.002499e-01
    > #unique......... 427, #Total UniqueCount: 2747
    74,75c74,75
    < mean............ 1.890489e+00
    < variance........ 1.054702e+01
    ---
    > mean............ 1.679966e+00
    > variance........ 1.119450e+01
    79,81c79,81
    < mean............ 6.512111e-01
    < variance........ 3.851790e-01
    < #unique......... 416, #Total UniqueCount: 3141
    ---
    > mean............ 6.092758e-01
    > variance........ 4.169687e-01
    > #unique......... 431, #Total UniqueCount: 3178
    84,85c84,85
    < mean............ 1.361283e+00
    < variance........ 7.094033e+00
    ---
    > mean............ 1.367527e+00
    > variance........ 6.934006e+00
    89,91c89,91
    < mean............ 5.889137e-01
    < variance........ 4.540842e-01
    < #unique......... 425, #Total UniqueCount: 3566
    ---
    > mean............ 6.156435e-01
    > variance........ 4.200404e-01
    > #unique......... 423, #Total UniqueCount: 3601
    94,95c94,95
    < mean............ 1.302953e+00
    < variance........ 6.689053e+00
    ---
    > mean............ 1.366945e+00
    > variance........ 6.752356e+00
    99,101c99,101
    < mean............ 6.736725e-01
    < variance........ 3.635173e-01
    < #unique......... 387, #Total UniqueCount: 3953
    ---
    > mean............ 6.356096e-01
    > variance........ 4.049092e-01
    > #unique......... 425, #Total UniqueCount: 4026
    104,105c104,105
    < mean............ 1.366363e+00
    < variance........ 5.366901e+00
    ---
    > mean............ 1.393369e+00
    > variance........ 6.402281e+00
    109,111c109,111
    < mean............ 6.431350e-01
    < variance........ 3.888953e-01
    < #unique......... 406, #Total UniqueCount: 4359
    ---
    > mean............ 6.164552e-01
    > variance........ 4.133295e-01
    > #unique......... 431, #Total UniqueCount: 4457
    114,115c114,115
    < mean............ 1.299767e+00
    < variance........ 5.746716e+00
    ---
    > mean............ 1.211458e+00
    > variance........ 6.857465e+00
    119,121c119,121
    < mean............ 6.372908e-01
    < variance........ 3.977796e-01
    < #unique......... 403, #Total UniqueCount: 4762
    ---
    > mean............ 6.562369e-01
    > variance........ 3.846095e-01
    > #unique......... 401, #Total UniqueCount: 4858
    124,125c124,125
    < mean............ 1.311906e+00
    < variance........ 6.047898e+00
    ---
    > mean............ 1.391469e+00
    > variance........ 6.147332e+00
    129,131c129,131
    < mean............ 6.385858e-01
    < variance........ 4.078118e-01
    < #unique......... 419, #Total UniqueCount: 5181
    ---
    > mean............ 6.651051e-01
    > variance........ 3.848492e-01
    > #unique......... 403, #Total UniqueCount: 5261
    134,135c134,135
    < mean............ 1.404711e+00
    < variance........ 5.615646e+00
    ---
    > mean............ 1.330140e+00
    > variance........ 5.689063e+00
    139,141c139,141
    < mean............ 6.449885e-01
    < variance........ 3.908594e-01
    < #unique......... 421, #Total UniqueCount: 5602
    ---
    > mean............ 6.208946e-01
    > variance........ 4.056497e-01
    > #unique......... 435, #Total UniqueCount: 5696
    144,145c144,145
    < mean............ 1.304838e+00
    < variance........ 6.055993e+00
    ---
    > mean............ 1.343203e+00
    > variance........ 7.001236e+00
    149,151c149,151
    < mean............ 6.314848e-01
    < variance........ 3.932786e-01
    < #unique......... 439, #Total UniqueCount: 6041
    ---
    > mean............ 6.724621e-01
    > variance........ 3.550086e-01
    > #unique......... 419, #Total UniqueCount: 6115
    154,155c154,155
    < mean............ 1.340550e+00
    < variance........ 5.555145e+00
    ---
    > mean............ 1.282502e+00
    > variance........ 5.515707e+00
    169,170c169,170
    < Mon Feb 6 02:33:34 2012
    < Total run time : 0 hours 0 minutes and 2 seconds
    ---
    > Wed May 4 00:50:44 2011
    > Total run time : 0 hours 0 minutes and 1 seconds
    198c198
    < Mon Feb 6 02:33:34 2012
    ---
    > Wed May 4 00:50:44 2011
    238c238
    < #unique......... 626, #Total UniqueCount: 1626
    ---
    > #unique......... 627, #Total UniqueCount: 1627
    248c248
    < #unique......... 682, #Total UniqueCount: 2308
    ---
    > #unique......... 682, #Total UniqueCount: 2309
    256,258c256,258
    < mean............ -6.158385e-01
    < variance........ 4.141548e-01
    < #unique......... 410, #Total UniqueCount: 2718
    ---
    > mean............ -6.128608e-01
    > variance........ 4.144967e-01
    > #unique......... 429, #Total UniqueCount: 2738
    261,262c261,262
    < mean............ 4.050484e+00
    < variance........ 7.894210e+00
    ---
    > mean............ 4.007063e+00
    > variance........ 7.658184e+00
    266,268c266,268
    < mean............ -6.071496e-01
    < variance........ 4.209873e-01
    < #unique......... 438, #Total UniqueCount: 3156
    ---
    > mean............ -6.212577e-01
    > variance........ 4.115324e-01
    > #unique......... 437, #Total UniqueCount: 3175
    271,272c271,272
    < mean............ 4.021939e+00
    < variance........ 8.389006e+00
    ---
    > mean............ 4.165113e+00
    > variance........ 7.042534e+00
    276,278c276,278
    < mean............ -6.620590e-01
    < variance........ 3.616736e-01
    < #unique......... 429, #Total UniqueCount: 3585
    ---
    > mean............ -6.544408e-01
    > variance........ 3.750827e-01
    > #unique......... 411, #Total UniqueCount: 3586
    281,282c281,282
    < mean............ 3.979958e+00
    < variance........ 8.048846e+00
    ---
    > mean............ 4.169934e+00
    > variance........ 6.904521e+00
    286,288c286,288
    < mean............ -6.598122e-01
    < variance........ 3.765772e-01
    < #unique......... 401, #Total UniqueCount: 3986
    ---
    > mean............ -6.581255e-01
    > variance........ 3.650709e-01
    > #unique......... 417, #Total UniqueCount: 4003
    291,292c291,292
    < mean............ 4.111091e+00
    < variance........ 7.309642e+00
    ---
    > mean............ 4.216442e+00
    > variance........ 6.401695e+00
    296,298c296,298
    < mean............ -6.506197e-01
    < variance........ 3.837994e-01
    < #unique......... 433, #Total UniqueCount: 4419
    ---
    > mean............ -6.506840e-01
    > variance........ 3.775357e-01
    > #unique......... 419, #Total UniqueCount: 4422
    301,302c301,302
    < mean............ 3.986862e+00
    < variance........ 7.389448e+00
    ---
    > mean............ 3.803004e+00
    > variance........ 8.929374e+00
    306,308c306,308
    < mean............ -6.816249e-01
    < variance........ 3.558025e-01
    < #unique......... 389, #Total UniqueCount: 4808
    ---
    > mean............ -6.497109e-01
    > variance........ 3.885300e-01
    > #unique......... 403, #Total UniqueCount: 4825
    311,312c311,312
    < mean............ 4.314444e+00
    < variance........ 5.968875e+00
    ---
    > mean............ 4.103374e+00
    > variance........ 7.038492e+00
    316,318c316,318
    < mean............ -6.609985e-01
    < variance........ 3.776215e-01
    < #unique......... 405, #Total UniqueCount: 5213
    ---
    > mean............ -7.002825e-01
    > variance........ 3.359944e-01
    > #unique......... 407, #Total UniqueCount: 5232
    321,322c321,322
    < mean............ 4.149115e+00
    < variance........ 6.419488e+00
    ---
    > mean............ 4.113148e+00
    > variance........ 6.708839e+00
    326,328c326,328
    < mean............ -7.054866e-01
    < variance........ 3.220581e-01
    < #unique......... 398, #Total UniqueCount: 5611
    ---
    > mean............ -6.969895e-01
    > variance........ 3.268609e-01
    > #unique......... 398, #Total UniqueCount: 5630
    331,332c331,332
    < mean............ 4.051897e+00
    < variance........ 6.905885e+00
    ---
    > mean............ 4.218568e+00
    > variance........ 6.475102e+00
    336,338c336,338
    < mean............ -6.372628e-01
    < variance........ 3.979455e-01
    < #unique......... 435, #Total UniqueCount: 6046
    ---
    > mean............ -6.652317e-01
    > variance........ 3.542651e-01
    > #unique......... 415, #Total UniqueCount: 6045
    341,342c341,342
    < mean............ 4.074554e+00
    < variance........ 6.464851e+00
    ---
    > mean............ 4.084384e+00
    > variance........ 7.039829e+00
    356c356
    < Mon Feb 6 02:33:36 2012
    ---
    > Wed May 4 00:50:46 2011
    392c392
    < Mon Feb 6 02:33:36 2012
    ---
    > Wed May 4 00:50:46 2011
    432c432
    < #unique......... 1835, #Total UniqueCount: 4835
    ---
    > #unique......... 1836, #Total UniqueCount: 4836
    442c442
    < #unique......... 2051, #Total UniqueCount: 6886
    ---
    > #unique......... 2051, #Total UniqueCount: 6887
    450,452c450,452
    < mean............ 2.892238e-01
    < variance........ 2.834886e-02
    < #unique......... 1930, #Total UniqueCount: 8816
    ---
    > mean............ 2.864275e-01
    > variance........ 2.897977e-02
    > #unique......... 2046, #Total UniqueCount: 8933
    455,456c455,456
    < mean............ 8.976971e-01
    < variance........ 6.559784e+00
    ---
    > mean............ 8.399118e-01
    > variance........ 6.825600e+00
    460,462c460,462
    < mean............ 2.830900e-01
    < variance........ 2.963827e-02
    < #unique......... 1830, #Total UniqueCount: 10646
    ---
    > mean............ 2.838900e-01
    > variance........ 2.869139e-02
    > #unique......... 1878, #Total UniqueCount: 10811
    465,466c465,466
    < mean............ 9.209788e-01
    < variance........ 7.093196e+00
    ---
    > mean............ 8.908219e-01
    > variance........ 6.798754e+00
    470,472c470,472
    < mean............ 2.927005e-01
    < variance........ 2.727738e-02
    < #unique......... 1788, #Total UniqueCount: 12434
    ---
    > mean............ 2.901938e-01
    > variance........ 2.813199e-02
    > #unique......... 1798, #Total UniqueCount: 12609
    475,476c475,476
    < mean............ 9.232597e-01
    < variance........ 5.726659e+00
    ---
    > mean............ 8.704130e-01
    > variance........ 6.203916e+00
    480,482c480,482
    < mean............ 2.979349e-01
    < variance........ 2.611758e-02
    < #unique......... 1796, #Total UniqueCount: 14230
    ---
    > mean............ 2.921695e-01
    > variance........ 2.741696e-02
    > #unique......... 1814, #Total UniqueCount: 14423
    485,486c485,486
    < mean............ 8.551783e-01
    < variance........ 5.525685e+00
    ---
    > mean............ 8.472001e-01
    > variance........ 5.701943e+00
    490,492c490,492
    < mean............ 2.907793e-01
    < variance........ 2.782226e-02
    < #unique......... 1835, #Total UniqueCount: 16065
    ---
    > mean............ 2.880376e-01
    > variance........ 2.808988e-02
    > #unique......... 1842, #Total UniqueCount: 16265
    495,496c495,496
    < mean............ 8.153283e-01
    < variance........ 5.798830e+00
    ---
    > mean............ 8.380206e-01
    > variance........ 6.541224e+00
    500,502c500,502
    < mean............ 2.878298e-01
    < variance........ 2.813415e-02
    < #unique......... 1841, #Total UniqueCount: 17906
    ---
    > mean............ 2.860009e-01
    > variance........ 2.828495e-02
    > #unique......... 1853, #Total UniqueCount: 18118
    505,506c505,506
    < mean............ 8.619903e-01
    < variance........ 6.217931e+00
    ---
    > mean............ 8.542092e-01
    > variance........ 6.452253e+00
    510,512c510,512
    < mean............ 2.919372e-01
    < variance........ 2.700553e-02
    < #unique......... 1840, #Total UniqueCount: 19746
    ---
    > mean............ 2.942904e-01
    > variance........ 2.682284e-02
    > #unique......... 1804, #Total UniqueCount: 19922
    515,516c515,516
    < mean............ 8.663843e-01
    < variance........ 5.868741e+00
    ---
    > mean............ 8.537841e-01
    > variance........ 5.747967e+00
    520,522c520,522
    < mean............ 2.926986e-01
    < variance........ 2.639249e-02
    < #unique......... 1845, #Total UniqueCount: 21591
    ---
    > mean............ 2.903657e-01
    > variance........ 2.744221e-02
    > #unique......... 1848, #Total UniqueCount: 21770
    525,526c525,526
    < mean............ 8.272705e-01
    < variance........ 5.612883e+00
    ---
    > mean............ 8.261983e-01
    > variance........ 6.038556e+00
    530,532c530,532
    < mean............ 2.986399e-01
    < variance........ 2.579183e-02
    < #unique......... 1802, #Total UniqueCount: 23393
    ---
    > mean............ 2.983268e-01
    > variance........ 2.579515e-02
    > #unique......... 1721, #Total UniqueCount: 23491
    535,536c535,536
    < mean............ 8.347552e-01
    < variance........ 5.538380e+00
    ---
    > mean............ 8.328409e-01
    > variance........ 5.329774e+00
    545c545
    < X[ 1] : 9.995033e-01 G[ 1] : -2.873151e-09
    ---
    > X[ 1] : 9.995033e-01 G[ 1] : -1.746217e-09
    550c550
    < Mon Feb 6 02:33:38 2012
    ---
    > Wed May 4 00:50:48 2011
    560c560
    < [1] -2.873151e-09
    ---
    > [1] -1.746217e-09
    600c600
    < Mon Feb 6 02:33:38 2012
    ---
    > Wed May 4 00:50:48 2011
    645c645
    < #unique......... 3037, #Total UniqueCount: 8037
    ---
    > #unique......... 3044, #Total UniqueCount: 8044
    659c659
    < #unique......... 3637, #Total UniqueCount: 11674
    ---
    > #unique......... 3637, #Total UniqueCount: 11681
    671,673c671,673
    < mean............ 9.975146e-01
    < variance........ 6.585727e-01
    < #unique......... 3537, #Total UniqueCount: 15211
    ---
    > mean............ 9.908482e-01
    > variance........ 6.618397e-01
    > #unique......... 3424, #Total UniqueCount: 15105
    676,677c676,677
    < mean............ -9.363936e-01
    < variance........ 1.468528e+01
    ---
    > mean............ -8.496201e-01
    > variance........ 1.499378e+01
    680,681c680,681
    < mean............ -8.485870e-01
    < variance........ 1.573330e+01
    ---
    > mean............ -9.517423e-01
    > variance........ 1.704030e+01
    685,687c685,687
    < mean............ 9.804646e-01
    < variance........ 6.692293e-01
    < #unique......... 3377, #Total UniqueCount: 18588
    ---
    > mean............ 9.876343e-01
    > variance........ 6.651307e-01
    > #unique......... 3644, #Total UniqueCount: 18749
    690,691c690,691
    < mean............ -8.931520e-01
    < variance........ 1.584134e+01
    ---
    > mean............ -9.384029e-01
    > variance........ 1.481110e+01
    694,695c694,695
    < mean............ -8.695397e-01
    < variance........ 1.673775e+01
    ---
    > mean............ -9.034500e-01
    > variance........ 1.643253e+01
    699,701c699,701
    < mean............ 1.000466e+00
    < variance........ 6.610175e-01
    < #unique......... 2788, #Total UniqueCount: 21376
    ---
    > mean............ 9.806229e-01
    > variance........ 6.682968e-01
    > #unique......... 3362, #Total UniqueCount: 22111
    704,705c704,705
    < mean............ -9.517187e-01
    < variance........ 1.342741e+01
    ---
    > mean............ -8.987182e-01
    > variance........ 1.459533e+01
    708,709c708,709
    < mean............ -9.679348e-01
    < variance........ 1.562253e+01
    ---
    > mean............ -8.906048e-01
    > variance........ 1.576451e+01
    713,715c713,715
    < mean............ 9.984302e-01
    < variance........ 6.616115e-01
    < #unique......... 2602, #Total UniqueCount: 23978
    ---
    > mean............ 9.919701e-01
    > variance........ 6.650665e-01
    > #unique......... 3036, #Total UniqueCount: 25147
    718,719c718,719
    < mean............ -9.667758e-01
    < variance........ 1.480870e+01
    ---
    > mean............ -8.717355e-01
    > variance........ 1.478299e+01
    722,723c722,723
    < mean............ -8.608610e-01
    < variance........ 1.435540e+01
    ---
    > mean............ -9.837840e-01
    > variance........ 1.514727e+01
    727,729c727,729
    < mean............ 9.832149e-01
    < variance........ 6.659886e-01
    < #unique......... 2676, #Total UniqueCount: 26654
    ---
    > mean............ 9.785551e-01
    > variance........ 6.679199e-01
    > #unique......... 3077, #Total UniqueCount: 28224
    732,733c732,733
    < mean............ -8.399847e-01
    < variance........ 1.425099e+01
    ---
    > mean............ -9.419792e-01
    > variance........ 1.386377e+01
    736,737c736,737
    < mean............ -9.599173e-01
    < variance........ 1.448148e+01
    ---
    > mean............ -1.039813e+00
    > variance........ 1.409147e+01
    741,743c741,743
    < mean............ 1.006897e+00
    < variance........ 6.591276e-01
    < #unique......... 2583, #Total UniqueCount: 29237
    ---
    > mean............ 9.839740e-01
    > variance........ 6.656382e-01
    > #unique......... 3060, #Total UniqueCount: 31284
    746,747c746,747
    < mean............ -8.664300e-01
    < variance........ 1.323069e+01
    ---
    > mean............ -8.969875e-01
    > variance........ 1.451103e+01
    750,751c750,751
    < mean............ -9.164463e-01
    < variance........ 1.398009e+01
    ---
    > mean............ -9.500069e-01
    > variance........ 1.386560e+01
    755,757c755,757
    < mean............ 1.012706e+00
    < variance........ 6.555265e-01
    < #unique......... 2520, #Total UniqueCount: 31757
    ---
    > mean............ 9.789811e-01
    > variance........ 6.679682e-01
    > #unique......... 3061, #Total UniqueCount: 34345
    760,761c760,761
    < mean............ -9.005868e-01
    < variance........ 1.176762e+01
    ---
    > mean............ -9.538414e-01
    > variance........ 1.433291e+01
    764,765c764,765
    < mean............ -9.545787e-01
    < variance........ 1.352363e+01
    ---
    > mean............ -9.436746e-01
    > variance........ 1.351829e+01
    769,771c769,771
    < mean............ 1.003790e+00
    < variance........ 6.575968e-01
    < #unique......... 2608, #Total UniqueCount: 34365
    ---
    > mean............ 9.875318e-01
    > variance........ 6.633945e-01
    > #unique......... 3040, #Total UniqueCount: 37385
    774,775c774,775
    < mean............ -8.943001e-01
    < variance........ 1.372665e+01
    ---
    > mean............ -9.461229e-01
    > variance........ 1.291516e+01
    778,779c778,779
    < mean............ -9.199017e-01
    < variance........ 1.275297e+01
    ---
    > mean............ -8.618071e-01
    > variance........ 1.353977e+01
    783,785c783,785
    < mean............ 9.729715e-01
    < variance........ 6.665570e-01
    < #unique......... 2753, #Total UniqueCount: 37118
    ---
    > mean............ 1.001984e+00
    > variance........ 6.571237e-01
    > #unique......... 3017, #Total UniqueCount: 40402
    788,789c788,789
    < mean............ -9.088842e-01
    < variance........ 1.356276e+01
    ---
    > mean............ -8.762315e-01
    > variance........ 1.233993e+01
    792,793c792,793
    < mean............ -8.351150e-01
    < variance........ 1.345370e+01
    ---
    > mean............ -9.260666e-01
    > variance........ 1.186558e+01
    797,799c797,799
    < mean............ 9.691748e-01
    < variance........ 6.659975e-01
    < #unique......... 2640, #Total UniqueCount: 39758
    ---
    > mean............ 9.897763e-01
    > variance........ 6.618311e-01
    > #unique......... 3042, #Total UniqueCount: 43444
    802,803c802,803
    < mean............ -9.653398e-01
    < variance........ 1.173838e+01
    ---
    > mean............ -9.666213e-01
    > variance........ 1.173213e+01
    806,807c806,807
    < mean............ -9.174944e-01
    < variance........ 1.304441e+01
    ---
    > mean............ -9.631840e-01
    > variance........ 1.168714e+01
    816,817c816,817
    < X[ 1] : -1.000000e+00 G[ 1] : 4.962760e-08
    < X[ 2] : -1.000000e+00 G[ 2] : -4.060125e-08
    ---
    > X[ 1] : -1.000000e+00 G[ 1] : 8.647865e-08
    > X[ 2] : -1.000000e+00 G[ 2] : -7.059874e-08
    822,823c822,823
    < Mon Feb 6 02:33:52 2012
    < Total run time : 0 hours 0 minutes and 14 seconds
    ---
    > Wed May 4 00:50:56 2011
    > Total run time : 0 hours 0 minutes and 8 seconds
    832c832
    < [1] 4.962760e-08 -4.060125e-08
    ---
    > [1] 8.647865e-08 -7.059874e-08
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... OK
  • checking re-building of vignette PDFs ... OK
  • checking PDF version of manual ... OK