• using R version 2.14.2 RC (2012-02-23 r58468)
• using platform: i686-pc-linux-gnu (32-bit)
• using session charset: UTF-8
• checking for file ‘rconifers/DESCRIPTION’ ... OK
• this is package ‘rconifers’ version ‘1.0.5’
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... NOTE
  As from R 2.14.0 all packages need a namespace.
  One will be generated on installation, but it is better to handcraft a
  NAMESPACE file: R CMD build will produce a suitable starting point.
• checking for executable files ... OK
• checking whether package ‘rconifers’ can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking for unstated dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... NOTE
  File ‘rconifers/R/rconifers.r’:
  .First.lib calls:
  cat(paste(vertxt, introtxt))
  cat(introtxt)
  
  Package startup functions should use ‘packageStartupMessage’ to
  generate messages.
  See section ‘Good practice’ in ?.onAttach.
  
  .First.lib: warning in packageDescription("rconifers", lib = mylib):
  partial argument match of 'lib' to 'lib.loc'
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... WARNING
  Assignments in \usage in documentation object 'sample.data':
  sample.swo.3 <- list(plots = plots.swo, plants = plants.swo,
  age = 3, x0 = 0)
  class(sample.swo.3) <- "sample.data"
  
  Functions with \usage entries need to have the appropriate \alias
  entries, and all their arguments documented.
  The \usage entries must correspond to syntactically valid R code.
  See the chapter ‘Writing R documentation files’ in the ‘Writing R
  Extensions’ manual.
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... WARNING
  Files not of a type allowed in a ‘data’ directory:
  ‘stnd73.con’ ‘stnd73b.con’ ‘stnd73b_short.con’
  ‘stnd73b_short_dfonly.con’
  Please use e.g. ‘inst/extdata’ for non-R data files
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking examples ... OK
• checking PDF version of manual ... OK
  WARNING: There were 2 warnings, see
  ‘/home/hornik/tmp/R.check/r-patched/Work/PKGS/rconifers.Rcheck/00check.log’
  for details