- using R version 2.14.2 RC (2012-02-23 r58468)
- using platform: i686-pc-linux-gnu (32-bit)
- using session charset: UTF-8
- checking for file ‘oro.nifti/DESCRIPTION’ ... OK
- this is package ‘oro.nifti’ version ‘0.3.1’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking whether package ‘oro.nifti’ can be installed ... OK
- checking installed package size ... OK
- checking package directory ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking for unstated dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... NOTE
File ‘oro.nifti/R/zzz.R’:
.onLoad calls:
require("XML")
Package startup functions should not change the search path.
See section ‘Good practice’ in ?.onAttach.
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking examples ... OK
- checking differences from ‘oro.nifti-Ex.Rout’ to ‘oro.nifti-Ex.Rout.save’ ...
3c3
< oro.nifti: Rigorous - NIfTI+ANALYZE+AFNI Input / Output (version = 0.3.1)
---
> oro.nifti: Rigorous - NIfTI+ANALYZE+AFNI Input / Output (version = 0.2.7)
306,337d305
< > nameEx("calmin-methods")
< > ### * calmin-methods
< >
< > flush(stderr()); flush(stdout())
< >
< > ### Name: cal.min-methods
< > ### Title: Extract or Replace NIfTI/Analyze Min or Max Values
< > ### Aliases: cal.min-methods cal.min,anlz-method cal.min,nifti-method
< > ### cal.min<-,anlz-method cal.min<-,nifti-method cal.min cal.min<-
< > ### cal.max-methods cal.max,anlz-method cal.max,nifti-method
< > ### cal.max<-,anlz-method cal.max<-,nifti-method cal.max cal.max<-
< > ### Keywords: methods
< >
< > ### ** Examples
< >
< > ## Not run:
< > ##D url <- "http://nifti.nimh.nih.gov/nifti-1/data/avg152T1_LR_nifti.nii.gz"
< > ##D urlfile <- file.path(system.file("nifti", package="oro.nifti"),
< > ##D "mniLR.nii.gz")
< > ##D download.file(url, urlfile, quiet=TRUE)
< > ## End(Not run)
< > urlfile <- file.path(system.file("nifti", package="oro.nifti"),
< + "mniLR.nii.gz")
< > mniLR <- readNIfTI(urlfile)
< > cal.min(mniLR)
< [1] 0
< > cal.max(mniLR)
< [1] 255
< >
< >
< >
< > cleanEx()
456c424
< [1] "FSL3.2beta; R version 2.14.2 RC (2012-02-23 r58468)"
---
> [1] "FSL3.2beta; R version 2.13.0 (2011-04-13)"
560,567d527
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
582,589d541
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
862,877d813
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
879,894d814
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
1059,1074d978
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
1076,1091d979
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
1095,1110d982
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
1186,1193d1057
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
1198c1062
< vox_offset = 1344
---
> vox_offset = 1296
1200c1064
< writing data at byte = 1344
---
> writing data at byte = 1296
1207c1071
< vox_offset = 1344
---
> vox_offset = 1296
1210c1074
< seek(fid) = 1344
---
> seek(fid) = 1296
1229,1244d1092
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
< Warning in removeNodes.list(kids) :
< removeNode only works on internal nodes at present
OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... OK
- checking re-building of vignette PDFs ... OK
- checking PDF version of manual ... OK