* Installing to library '/home/hornik/tmp/R.check/r-patched/Work/build/Packages'
* Installing *source* package 'ncdf' ...
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking netcdf.h usability... yes
checking netcdf.h presence... yes
checking for netcdf.h... yes
Found netcdf.h in: .
checking for nc_open in -lnetcdf... yes
Found netcdf library file libnetcdf.a in directory .
configure: creating ./config.status
config.status: creating R/load.R
config.status: creating src/Makevars
** libs
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I. -I/usr/local/include    -fpic  -g -O2 -c ncdf.c -o ncdf.o
ncdf.c: In function ‘R_nc_ttc_to_nctype’:
ncdf.c:424: warning: implicit declaration of function ‘exit’
ncdf.c:424: warning: incompatible implicit declaration of built-in function ‘exit’
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I. -I/usr/local/include    -fpic  -g -O2 -c ncdf2.c -o ncdf2.o
gcc -std=gnu99 -I/home/hornik/tmp/R.check/r-patched/Work/build/include -I. -I/usr/local/include    -fpic  -g -O2 -c ncdf3.c -o ncdf3.o
ncdf3.c: In function ‘R_nc_get_vara_charvarid’:
ncdf3.c:221: warning: assignment discards qualifiers from pointer target type
ncdf3.c: In function ‘R_nc_get_vara_numvarid’:
ncdf3.c:267: warning: assignment discards qualifiers from pointer target type
gcc -std=gnu99 -shared -L/usr/local/lib -o ncdf.so ncdf.o ncdf2.o ncdf3.o -L. -lnetcdf  -L/home/hornik/tmp/R.check/r-patched/Work/build/lib -lR
** R
** preparing package for lazy loading
** help
Note: unmatched right brace in file 'att.get.ncdf.Rd' on or after line 6
Note: unmatched right brace in file 'version.ncdf.Rd' on or after line 6
Note: removing empty section \arguments
 >>> Building/Updating help pages for package 'ncdf'
     Formats: text html latex example 
  ancdf                             text    html    latex
  aput.var.ncdf                     text    html    latex   example
  att.get.ncdf                      text    html    latex   example
  att.put.ncdf                      text    html    latex   example
  close.ncdf                        text    html    latex   example
  create.ncdf                       text    html    latex   example
  dim.def.ncdf                      text    html    latex   example
  enddef.ncdf                       text    html    latex   example
  get.var.ncdf                      text    html    latex   example
  ncdf-internal                     text    html    latex
  open.ncdf                         text    html    latex   example
  print.ncdf                        text    html    latex   example
  redef.ncdf                        text    html    latex   example
  set.missval.ncdf                  text    html    latex   example
  sync.ncdf                         text    html    latex   example
  var.add.ncdf                      text    html    latex   example
  var.def.ncdf                      text    html    latex   example
  version.ncdf                      text    html    latex
** building package indices ...
* DONE (ncdf)